Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   ABC814_RS02545 Genome accession   NZ_CP155533
Coordinates   494429..495478 (+) Length   349 a.a.
NCBI ID   WP_000653767.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Spn1439-106     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 489429..500478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC814_RS02515 (ABC814_02515) - 490379..490783 (+) 405 WP_000343113.1 hypothetical protein -
  ABC814_RS02520 (ABC814_02520) dnaJ 491127..492263 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  ABC814_RS02525 (ABC814_02525) - 492570..492764 (-) 195 WP_050267646.1 hypothetical protein -
  ABC814_RS02530 (ABC814_02530) - 492926..493213 (-) 288 WP_000777760.1 hypothetical protein -
  ABC814_RS02535 (ABC814_02535) - 493223..493633 (-) 411 WP_001278301.1 HIT family protein -
  ABC814_RS02540 (ABC814_02540) pptA 493701..494432 (+) 732 WP_000889919.1 ABC transporter ATP-binding protein Regulator
  ABC814_RS02545 (ABC814_02545) pptB 494429..495478 (+) 1050 WP_000653767.1 ABC transporter permease Regulator
  ABC814_RS02550 (ABC814_02550) - 495646..495975 (-) 330 WP_000132572.1 hypothetical protein -
  ABC814_RS02555 (ABC814_02555) - 496251..496589 (+) 339 WP_000876676.1 LytTR family DNA-binding domain-containing protein -
  ABC814_RS02560 (ABC814_02560) comE/blpR 496594..497331 (+) 738 WP_001219147.1 response regulator transcription factor Regulator
  ABC814_RS02565 (ABC814_02565) - 497345..498685 (+) 1341 WP_001017622.1 sensor histidine kinase -
  ABC814_RS02570 (ABC814_02570) blpC 498727..498882 (-) 156 WP_000358817.1 quorum-sensing system pheromone BlpC -
  ABC814_RS02575 (ABC814_02575) - 498939..500300 (-) 1362 WP_001087624.1 bacteriocin secretion accessory protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40570.64 Da        Isoelectric Point: 10.0008

>NTDB_id=896777 ABC814_RS02545 WP_000653767.1 494429..495478(+) (pptB) [Streptococcus pneumoniae strain Spn1439-106]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKASKFFTETG
LDWDYLISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=896777 ABC814_RS02545 WP_000653767.1 494429..495478(+) (pptB) [Streptococcus pneumoniae strain Spn1439-106]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTATTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTCTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCTTTATTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTATATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTCGTCAAAAGGCCAGCAAATTTTTTACTGAAACTGGA
CTGGACTGGGACTATCTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGTGTCAAGCGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTCTTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.714

100

0.479

  pptB Streptococcus thermophilus LMD-9

46.857

100

0.47