Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LDN16_RS11565 Genome accession   NZ_AP024961
Coordinates   2617660..2618364 (+) Length   234 a.a.
NCBI ID   WP_223918924.1    Uniprot ID   -
Organism   Legionella pneumophila strain 80-045     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2612660..2623364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDN16_RS11540 (LEG80045_22450) - 2613892..2614770 (+) 879 WP_027265191.1 lpg2327 family Dot/Icm T4SS effector -
  LDN16_RS11545 (LEG80045_22460) - 2615034..2615417 (+) 384 WP_027265190.1 hypothetical protein -
  LDN16_RS11550 (LEG80045_22470) - 2615611..2615841 (+) 231 WP_010948035.1 exodeoxyribonuclease VII small subunit -
  LDN16_RS11555 (LEG80045_22480) - 2615822..2616718 (+) 897 WP_027265189.1 polyprenyl synthetase family protein -
  LDN16_RS11560 (LEG80045_22490) bioC 2616762..2617616 (-) 855 WP_027265188.1 malonyl-ACP O-methyltransferase BioC -
  LDN16_RS11565 (LEG80045_22500) comFC 2617660..2618364 (+) 705 WP_223918924.1 ComF family protein Machinery gene
  LDN16_RS11570 (LEG80045_22510) - 2618393..2619466 (-) 1074 WP_027265186.1 RIP metalloprotease -
  LDN16_RS11575 (LEG80045_22520) - 2619523..2619801 (-) 279 WP_010948040.1 hypothetical protein -
  LDN16_RS11580 (LEG80045_22530) - 2619840..2619995 (+) 156 WP_162096598.1 hypothetical protein -
  LDN16_RS11585 (LEG80045_22540) hemA 2620119..2621393 (+) 1275 WP_223919175.1 glutamyl-tRNA reductase -
  LDN16_RS11590 (LEG80045_22550) prfA 2621377..2622465 (+) 1089 WP_010948042.1 peptide chain release factor 1 -
  LDN16_RS11595 (LEG80045_22560) prmC 2622458..2623321 (+) 864 WP_027265185.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26806.42 Da        Isoelectric Point: 9.3867

>NTDB_id=89674 LDN16_RS11565 WP_223918924.1 2617660..2618364(+) (comFC) [Legionella pneumophila strain 80-045]
MLQKFLSITQNLRLPSICTLCNQFHKSQLAVCSNCMEFMKQIGSFCQYCAYPLSDDTYLVCGQCVRKRPSFDSAYIAYRF
EEPLRSLIHQFKYHNGLYLASFLKQLLLNALPKSALKPDCLIPVPMHPKRLKRRGFNQAAVLTRLLARQLNIPYDLYYCQ
KIINTASQANLDGEQRRKNLRHAFYVPPVTYEHVMIVDDLLTTGSTANEMAHTLKNAGVKRVDICCCARAVTKN

Nucleotide


Download         Length: 705 bp        

>NTDB_id=89674 LDN16_RS11565 WP_223918924.1 2617660..2618364(+) (comFC) [Legionella pneumophila strain 80-045]
GTGCTCCAAAAATTCTTAAGTATAACACAGAACTTACGTTTACCTTCAATATGCACTCTTTGCAACCAGTTCCACAAAAG
CCAACTTGCAGTTTGCTCTAATTGCATGGAGTTTATGAAACAAATTGGATCATTCTGTCAGTACTGTGCCTACCCCCTTT
CTGATGATACGTATCTGGTTTGTGGTCAATGCGTTAGAAAAAGGCCCTCCTTTGATAGTGCTTATATAGCGTATCGTTTT
GAAGAGCCTCTGCGTAGTTTAATACATCAGTTTAAATACCATAATGGCCTTTATCTGGCCTCGTTTCTAAAGCAATTACT
TCTTAATGCCTTACCCAAAAGCGCATTGAAACCAGATTGTCTAATTCCCGTTCCCATGCATCCCAAACGATTAAAACGAA
GAGGATTTAACCAGGCTGCTGTATTAACCAGATTATTAGCTCGTCAATTAAACATCCCTTATGATTTATATTATTGTCAA
AAAATAATCAATACCGCTTCACAAGCCAACCTTGATGGAGAGCAACGAAGAAAAAATTTACGTCATGCTTTTTATGTACC
ACCTGTAACTTATGAACACGTCATGATTGTTGATGACTTATTAACCACAGGCAGCACAGCCAATGAAATGGCACATACAT
TAAAAAATGCCGGAGTTAAGAGAGTAGATATATGTTGTTGTGCGCGGGCTGTAACTAAGAACTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(12-64)

Phosphoribosyl transferase domain (Pribosyltran)

(140-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

98.718

100

0.987
  comFC Legionella pneumophila strain ERS1305867

98.469

83.761

0.825

Multiple sequence alignment