Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1978   Type   Machinery gene
Locus tag   LDN16_RS09690 Genome accession   NZ_AP024961
Coordinates   2182168..2182482 (-) Length   104 a.a.
NCBI ID   WP_027265078.1    Uniprot ID   -
Organism   Legionella pneumophila strain 80-045     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2177168..2187482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDN16_RS09665 (LEG80045_18740) - 2177592..2178092 (-) 501 WP_027265083.1 hypothetical protein -
  LDN16_RS09670 (LEG80045_18750) - 2178585..2179445 (+) 861 WP_027265082.1 polysaccharide deacetylase family protein -
  LDN16_RS09675 (LEG80045_18760) - 2179563..2180759 (-) 1197 WP_027265081.1 murein transglycosylase A -
  LDN16_RS09680 (LEG80045_18770) lpp1976 2180869..2181426 (-) 558 WP_027265080.1 hypothetical protein Machinery gene
  LDN16_RS09685 (LEG80045_18780) lpp1977 2181423..2182229 (-) 807 WP_027265079.1 PilW family protein Machinery gene
  LDN16_RS09690 (LEG80045_18790) lpp1978 2182168..2182482 (-) 315 WP_027265078.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LDN16_RS09695 (LEG80045_18800) hisC 2182642..2183751 (+) 1110 WP_027265077.1 histidinol-phosphate transaminase -
  LDN16_RS09700 (LEG80045_18810) - 2183788..2184129 (+) 342 WP_027265076.1 4a-hydroxytetrahydrobiopterin dehydratase -
  LDN16_RS09705 (LEG80045_18830) secF 2184322..2185239 (-) 918 WP_010947716.1 protein translocase subunit SecF -
  LDN16_RS09710 (LEG80045_18840) secD 2185252..2187108 (-) 1857 WP_010947717.1 protein translocase subunit SecD -
  LDN16_RS09715 (LEG80045_18850) yajC 2187130..2187465 (-) 336 WP_010947718.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12279.33 Da        Isoelectric Point: 8.4863

>NTDB_id=89671 LDN16_RS09690 WP_027265078.1 2182168..2182482(-) (lpp1978) [Legionella pneumophila strain 80-045]
MSKHQGFTLMEVLVSLMLMTTVVLMLVEQQLKTRDIINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRQSQK
KIILNVTWFKKSQSIIRSYDLDAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=89671 LDN16_RS09690 WP_027265078.1 2182168..2182482(-) (lpp1978) [Legionella pneumophila strain 80-045]
ATGAGCAAGCATCAGGGTTTCACTCTAATGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGAACAACAGTTGAAAACCAGAGATATAATCAATCATCTTATTTGGCGAATTCAAGGTTCCCAATATCTAGATCAAGTCG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCACCTTCAAATTATCATTTTGATATCAGGCAATCTCAAAAG
AAAATCATTTTGAATGTTACGTGGTTTAAAAAAAGCCAGTCCATTATTCGCTCCTATGATCTGGATGCTAATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1978 Legionella pneumophila strain ERS1305867

96.154

100

0.962
  lpp1978 Legionella pneumophila str. Paris

94.231

100

0.942

Multiple sequence alignment