Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1976   Type   Machinery gene
Locus tag   LDN16_RS09680 Genome accession   NZ_AP024961
Coordinates   2180869..2181426 (-) Length   185 a.a.
NCBI ID   WP_027265080.1    Uniprot ID   -
Organism   Legionella pneumophila strain 80-045     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2175869..2186426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDN16_RS09655 (LEG80045_18720) - 2176030..2176653 (-) 624 WP_027265085.1 hypothetical protein -
  LDN16_RS09660 (LEG80045_18730) - 2176872..2177522 (-) 651 WP_027265084.1 lysoplasmalogenase -
  LDN16_RS09665 (LEG80045_18740) - 2177592..2178092 (-) 501 WP_027265083.1 hypothetical protein -
  LDN16_RS09670 (LEG80045_18750) - 2178585..2179445 (+) 861 WP_027265082.1 polysaccharide deacetylase family protein -
  LDN16_RS09675 (LEG80045_18760) - 2179563..2180759 (-) 1197 WP_027265081.1 murein transglycosylase A -
  LDN16_RS09680 (LEG80045_18770) lpp1976 2180869..2181426 (-) 558 WP_027265080.1 hypothetical protein Machinery gene
  LDN16_RS09685 (LEG80045_18780) lpp1977 2181423..2182229 (-) 807 WP_027265079.1 PilW family protein Machinery gene
  LDN16_RS09690 (LEG80045_18790) lpp1978 2182168..2182482 (-) 315 WP_027265078.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LDN16_RS09695 (LEG80045_18800) hisC 2182642..2183751 (+) 1110 WP_027265077.1 histidinol-phosphate transaminase -
  LDN16_RS09700 (LEG80045_18810) - 2183788..2184129 (+) 342 WP_027265076.1 4a-hydroxytetrahydrobiopterin dehydratase -
  LDN16_RS09705 (LEG80045_18830) secF 2184322..2185239 (-) 918 WP_010947716.1 protein translocase subunit SecF -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 21666.09 Da        Isoelectric Point: 6.9395

>NTDB_id=89669 LDN16_RS09680 WP_027265080.1 2180869..2181426(-) (lpp1976) [Legionella pneumophila strain 80-045]
MKKTDSGFILLMTLCITFLMSLLVLASLQQIFLQYKALNSQETFHQNFYQLEHWMMRLARSPLLYAGMDCYMQKDYGANK
IANELVNNKGCLLILNQKKYRYFIEDLNEFSCLVLNKDGQKYASHHFRFTVLQDEEHGESAIMQLRFIKLGSNLSSCPEE
EIQVKEGVSSWRYLPDYKNFEILTG

Nucleotide


Download         Length: 558 bp        

>NTDB_id=89669 LDN16_RS09680 WP_027265080.1 2180869..2181426(-) (lpp1976) [Legionella pneumophila strain 80-045]
ATGAAAAAAACCGATTCCGGTTTCATTCTTTTAATGACGCTCTGTATAACTTTCTTGATGAGCTTATTGGTTTTGGCAAG
CCTCCAACAGATATTCTTGCAATACAAAGCACTTAATTCACAGGAGACATTTCATCAAAATTTCTATCAGTTGGAACATT
GGATGATGCGACTGGCGCGTTCACCGTTATTGTATGCAGGTATGGATTGTTATATGCAAAAAGATTATGGAGCTAATAAA
ATAGCAAACGAGTTGGTTAACAATAAAGGATGTTTGCTCATATTAAATCAGAAAAAATACAGATATTTTATTGAGGACCT
TAACGAGTTTTCTTGCTTGGTTCTTAATAAAGATGGGCAGAAATATGCTTCTCACCATTTTAGATTCACCGTATTACAAG
ACGAGGAGCATGGCGAATCTGCTATCATGCAATTAAGGTTTATCAAATTGGGTAGCAATTTGTCCTCTTGTCCAGAAGAG
GAAATACAGGTGAAGGAAGGGGTAAGCAGCTGGAGATACTTGCCAGATTATAAAAATTTTGAAATATTAACTGGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1976 Legionella pneumophila str. Paris

98.378

100

0.984
  lpp1976 Legionella pneumophila strain ERS1305867

97.297

100

0.973

Multiple sequence alignment