Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AABJ52_RS05600 Genome accession   NZ_AP027721
Coordinates   1141235..1141972 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain TBU0218_11-3CC     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1136235..1146972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ52_RS05570 (VEE67_10760) yfiL 1136420..1136758 (-) 339 WP_172411017.1 DUF2799 domain-containing protein -
  AABJ52_RS05575 (VEE67_10770) aroF 1136968..1138038 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AABJ52_RS05580 (VEE67_10780) tyrA 1138049..1139170 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AABJ52_RS05585 (VEE67_10790) pheA 1139213..1140373 (-) 1161 WP_023281432.1 bifunctional chorismate mutase/prephenate dehydratase -
  AABJ52_RS05590 pheL 1140472..1140519 (-) 48 WP_010723158.1 phe operon leader peptide -
  AABJ52_RS05595 (VEE67_10800) raiA 1140623..1140964 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AABJ52_RS05600 (VEE67_10810) comL 1141235..1141972 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AABJ52_RS05605 (VEE67_10820) rluD 1142107..1143087 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AABJ52_RS05610 (VEE67_10830) yfiH 1143084..1143815 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  AABJ52_RS05615 (VEE67_10840) clpC 1143945..1146518 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=89655 AABJ52_RS05600 WP_000197686.1 1141235..1141972(-) (comL) [Escherichia coli strain TBU0218_11-3CC]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=89655 AABJ52_RS05600 WP_000197686.1 1141235..1141972(-) (comL) [Escherichia coli strain TBU0218_11-3CC]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376