Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AABJ52_RS05290 Genome accession   NZ_AP027721
Coordinates   1083957..1084472 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain TBU0218_11-3CC     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1078957..1089472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ52_RS05245 (VEE67_10160) csrA 1079544..1079729 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  AABJ52_RS05275 (VEE67_10170) yqaB 1081187..1081753 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AABJ52_RS05280 (VEE67_10180) yqaA 1081750..1082178 (+) 429 WP_001287454.1 YqaA family protein -
  AABJ52_RS05285 (VEE67_10190) gshA 1082251..1083807 (+) 1557 WP_023281437.1 glutamate--cysteine ligase -
  AABJ52_RS05290 (VEE67_10200) luxS 1083957..1084472 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AABJ52_RS05295 (VEE67_10210) emrB 1084536..1086074 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AABJ52_RS05300 (VEE67_10220) emrA 1086091..1087263 (-) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AABJ52_RS05305 (VEE67_10230) emrR 1087390..1087920 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AABJ52_RS05310 (VEE67_10240) ygaH 1088011..1088346 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  AABJ52_RS05315 (VEE67_10250) ygaZ 1088336..1089073 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=89654 AABJ52_RS05290 WP_001130211.1 1083957..1084472(+) (luxS) [Escherichia coli strain TBU0218_11-3CC]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=89654 AABJ52_RS05290 WP_001130211.1 1083957..1084472(+) (luxS) [Escherichia coli strain TBU0218_11-3CC]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment