NTDB

Overview

Name	luxP	Type	Regulator
Locus tag	R4540_RS16890	Genome accession	NZ_CP137136
Coordinates	663693..664787 (-)	Length	364 a.a.
NCBI ID	WP_000823677.1	Uniprot ID	A0A0H3AEQ1
Organism	Vibrio cholerae V52
Function	autoinducer sensor (predicted from homology) Competence regulation

Genomic Context

Location: 658693..669787

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R4540_RS16870 (R4540_16885)	-	659047..659445 (+)	399	WP_000831416.1	YgiW/YdeI family stress tolerance OB fold protein	-
R4540_RS16875 (R4540_16890)	-	659683..660201 (+)	519	WP_000914961.1	hypothetical protein	-
R4540_RS16880 (R4540_16895)	-	660445..661110 (+)	666	WP_000268198.1	flagellar brake protein	-
R4540_RS16885 (R4540_16900)	luxQ	661102..663675 (-)	2574	WP_001026312.1	quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ	Regulator
R4540_RS16890 (R4540_16905)	luxP	663693..664787 (-)	1095	WP_000823677.1	substrate-binding domain-containing protein	Regulator
R4540_RS16895 (R4540_16910)	traF	664999..666159 (-)	1161	WP_001025868.1	conjugal transfer protein TraF	-
R4540_RS16900 (R4540_16915)	-	666261..666566 (-)	306	WP_000448828.1	GIY-YIG nuclease family protein	-
R4540_RS16905 (R4540_16920)	-	666566..667216 (-)	651	WP_001025632.1	YceH family protein	-
R4540_RS16910 (R4540_16925)	-	667258..667455 (-)	198	WP_001246071.1	hypothetical protein	-
R4540_RS16915 (R4540_16930)	-	667643..667963 (+)	321	WP_001089529.1	DUF496 family protein	-
R4540_RS16920 (R4540_16935)	-	668376..668627 (+)	252	WP_001882582.1	YgjV family protein	-

Sequence

Protein

Download Length: 364 a.a. Molecular weight: 41196.81 Da Isoelectric Point: 6.3129

                                >NTDB_id=896459 R4540_RS16890 WP_000823677.1 663693..664787(-) (luxP) [Vibrio cholerae V52]

MKRKLISPLFLIAALFSSTGQADSLKGYWHYDEFLAEFPEQRPISELFAQTVRDKPSALTVAQEQPVIISVVYPGQQISD

YWVRNIKAFEKRMDALGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLHSSETKLILQNI

TTPVKDWQGKQPMMYIGFDHEYGAQLLAQYYQAHAPKKPYSVLYFSEGYISEARGDTFIQDMNAVHHFPLASSYYTKATE

QSGYEATLNIVKNNPEIGFIYACATDVALGAAQALKELNRQDILVNGWGGGSAELEALAKGELDVTVMRMNDDTGVAMAE

AIKWDLEGKAVPLVYSGDFEVVTKQDSAARISELKARAFRYSDR

Nucleotide

Download Length: 1095 bp

                                >NTDB_id=896459 R4540_RS16890 WP_000823677.1 663693..664787(-) (luxP) [Vibrio cholerae V52]

ATGAAAAGAAAGCTAATATCTCCGCTGTTTCTGATAGCAGCACTCTTCAGCTCAACTGGTCAAGCCGATTCATTAAAAGG

CTATTGGCATTATGATGAATTTCTTGCTGAGTTCCCTGAACAGCGGCCAATTTCCGAGCTTTTTGCTCAAACAGTTCGTG

ATAAACCGAGTGCGTTGACGGTGGCGCAAGAACAACCCGTCATTATTTCGGTGGTCTATCCCGGACAGCAAATTTCTGAC

TATTGGGTTCGCAATATCAAAGCGTTTGAAAAGCGAATGGACGCTTTAGGGATTCGCTATCAAATCAATCAGGTGTTTAC

TCGCCCGAATCTTGATACTCGCCAGCAGAGTGTTTCCTTGATGGAAGCGCTGAAAAATAAGAGCGACTATCTGATTTTTA

CCTTAGATACCACCCGTCACCGCAAATTCATTGAGCATGTGCTGCACTCCTCCGAAACGAAACTGATTTTGCAAAACATC

ACGACGCCAGTCAAAGATTGGCAAGGCAAGCAGCCCATGATGTACATCGGTTTTGATCATGAGTACGGTGCGCAATTATT

GGCGCAATATTACCAAGCACATGCCCCGAAAAAGCCGTACTCAGTACTTTATTTTTCCGAGGGGTATATCAGTGAAGCGC

GGGGAGATACCTTCATTCAAGATATGAACGCGGTGCACCATTTTCCGTTGGCTTCTTCCTATTACACCAAGGCAACTGAG

CAAAGTGGCTATGAAGCGACCCTAAACATCGTCAAGAATAATCCAGAAATTGGCTTTATTTACGCCTGTGCGACGGACGT

CGCTTTGGGGGCTGCCCAGGCACTGAAAGAGCTGAATCGACAAGATATTCTGGTCAATGGTTGGGGAGGCGGCTCGGCAG

AGCTTGAAGCGCTTGCCAAAGGAGAATTGGATGTCACTGTGATGCGTATGAATGACGATACGGGTGTGGCGATGGCTGAA

GCGATTAAATGGGATTTGGAAGGGAAAGCCGTACCTTTGGTCTATTCAGGCGATTTTGAAGTGGTCACCAAACAAGATTC

AGCAGCACGTATTTCAGAACTGAAAGCTCGGGCTTTCCGTTATTCGGATCGTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-323)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A0H3AEQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
luxP	Vibrio cholerae strain A1552	99.451	100	0.995

Detailed information NTG0896459