Detailed information NTG0896397

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: R5L00_RS03685
• Genome accession: NZ_CP137134
• Coordinates: 814830..815690 (-)
• Length: 286 a.a.
• NCBI ID: WP_317653410.1
• Uniprot ID: A0AAU0KMF2
• Organism: Nitrosospira sp. Is2
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 809830..820690

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R5L00_RS03650 (R5L00_03650)	tsaB	810206..810874 (-)	669	WP_107692235.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
R5L00_RS03655 (R5L00_03655)	-	811005..811445 (+)	441	WP_107692234.1	host attachment protein	-
R5L00_RS03660 (R5L00_03660)	thpR	811449..812018 (-)	570	WP_107692233.1	RNA 2',3'-cyclic phosphodiesterase	-
R5L00_RS03665 (R5L00_03665)	ispF	811996..812502 (-)	507	WP_317653405.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
R5L00_RS03670 (R5L00_03670)	ispD	812568..813263 (-)	696	WP_317653406.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
R5L00_RS03675 (R5L00_03675)	zapD	813355..814110 (-)	756	WP_317653407.1	cell division protein ZapD	-
R5L00_RS03680 (R5L00_03680)	coaE	814222..814827 (-)	606	WP_317653408.1	dephospho-CoA kinase	-
R5L00_RS03685 (R5L00_03685)	pilD	814830..815690 (-)	861	WP_317653410.1	A24 family peptidase	Machinery gene
R5L00_RS03690 (R5L00_03690)	-	815848..817134 (-)	1287	WP_107692223.1	HlyC/CorC family transporter	-
R5L00_RS03695 (R5L00_03695)	-	817535..818362 (-)	828	WP_107692222.1	inner membrane protein YpjD	-
R5L00_RS03700 (R5L00_03700)	ffh	818428..819777 (+)	1350	WP_317653411.1	signal recognition particle protein	-
R5L00_RS03705 (R5L00_03705)	-	819791..820225 (-)	435	WP_317653412.1	DUF192 domain-containing protein	-
R5L00_RS03710 (R5L00_03710)	dut	820225..820677 (-)	453	WP_317654104.1	dUTP diphosphatase	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31506.34 Da
• Isoelectric Point: 7.8406

>NTDB_id=896397 R5L00_RS03685 WP_317653410.1 814830..815690(-) (pilD) [Nitrosospira sp. Is2]
MSLIEGLQSSEIFFVSFCTIFGLMVGSFLNVVIYRLPKMLERNWRRGCAEFRGELVEALPPYNIVIPRSSCPHCGHRIGA
LENIPLASYAILRGRCSRCGVPISARYPVVELLTGFLSAFIAWHFGFGFAACAALVFTWAMITLAFIDMDTQLLPDVITS
PLLWCGLLVNLSNGFTDIHSAVVGAIAGFLSLWLVYHGYRLIARKEGMGCGDFKLLAVIGAWFGWQMLPLVILFSSVTGV
IVGLGLIMVTRHGYHTPIAFGPFLAGGAMVALFWGNEINHVYFSWI

Nucleotide

• Length: 861 bp

>NTDB_id=896397 R5L00_RS03685 WP_317653410.1 814830..815690(-) (pilD) [Nitrosospira sp. Is2]
ATGTCCCTGATAGAAGGCTTGCAAAGCTCTGAGATTTTTTTTGTTTCGTTTTGTACCATCTTTGGCTTGATGGTCGGCAG
CTTTTTGAATGTGGTTATCTACCGCTTGCCCAAGATGCTGGAACGGAACTGGCGACGGGGGTGTGCTGAGTTCCGGGGGG
AGCTGGTAGAGGCACTGCCTCCTTATAACATCGTCATCCCCCGTTCCTCCTGCCCTCATTGCGGTCACCGGATAGGCGCG
CTCGAAAATATCCCGCTTGCAAGTTACGCGATTTTAAGGGGCCGGTGTTCTCGGTGCGGTGTGCCTATTTCCGCGCGCTA
TCCGGTTGTGGAACTATTGACCGGCTTTCTCAGCGCCTTCATCGCCTGGCATTTTGGTTTCGGATTTGCTGCTTGCGCCG
CTTTGGTTTTTACATGGGCAATGATCACGTTGGCGTTTATCGATATGGATACCCAACTGTTGCCCGATGTCATCACCTCG
CCTCTGTTATGGTGCGGGCTACTGGTTAATCTGAGTAACGGCTTTACCGACATCCACTCTGCAGTCGTAGGCGCCATTGC
GGGTTTTCTTTCGTTATGGCTGGTATACCACGGCTATAGATTGATAGCCCGAAAGGAAGGTATGGGGTGTGGCGATTTCA
AGCTTCTCGCGGTGATAGGCGCATGGTTTGGGTGGCAAATGCTGCCGCTGGTGATTTTGTTTTCCTCAGTGACAGGAGTC
ATCGTCGGTTTAGGCCTGATCATGGTTACAAGACATGGATACCACACCCCCATCGCGTTTGGGCCATTTCTTGCAGGTGG
GGCTATGGTGGCGCTGTTCTGGGGTAACGAAATTAATCACGTCTATTTCAGCTGGATTTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	49.825	99.65	0.497
pilD	Vibrio cholerae strain A1552	50.909	96.154	0.49
pilD	Acinetobacter baumannii D1279779	45.113	93.007	0.42
pilD	Acinetobacter nosocomialis M2	45.113	93.007	0.42
pilD	Neisseria gonorrhoeae MS11	45.882	89.161	0.409