Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   R5L00_RS03145 Genome accession   NZ_CP137134
Coordinates   705459..706259 (-) Length   266 a.a.
NCBI ID   WP_317654100.1    Uniprot ID   A0AAU0KPN2
Organism   Nitrosospira sp. Is2     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 700459..711259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5L00_RS03125 (R5L00_03125) - 702304..703485 (-) 1182 WP_317653321.1 efflux RND transporter periplasmic adaptor subunit -
  R5L00_RS03130 (R5L00_03130) - 703517..704203 (-) 687 WP_107692309.1 ABC transporter ATP-binding protein -
  R5L00_RS03135 (R5L00_03135) - 704202..704930 (+) 729 WP_317653322.1 arylesterase -
  R5L00_RS03140 (R5L00_03140) - 704927..705415 (+) 489 WP_317653324.1 universal stress protein -
  R5L00_RS03145 (R5L00_03145) comL 705459..706259 (-) 801 WP_317654100.1 outer membrane protein assembly factor BamD Machinery gene
  R5L00_RS03150 (R5L00_03150) rluD 706315..707307 (+) 993 WP_317653326.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  R5L00_RS03155 (R5L00_03155) pgeF 707304..708131 (+) 828 WP_317653328.1 peptidoglycan editing factor PgeF -
  R5L00_RS03160 (R5L00_03160) - 708192..709004 (+) 813 WP_317653329.1 ZIP family metal transporter -
  R5L00_RS03165 (R5L00_03165) rimO 709101..710432 (+) 1332 WP_317653330.1 30S ribosomal protein S12 methylthiotransferase RimO -
  R5L00_RS03170 (R5L00_03170) - 710550..711032 (+) 483 WP_317653332.1 hypothetical protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30530.67 Da        Isoelectric Point: 8.5304

>NTDB_id=896395 R5L00_RS03145 WP_317654100.1 705459..706259(-) (comL) [Nitrosospira sp. Is2]
MRRSLTLFLILLLSACGLLPKNVQDSKNWSASKYYSEAKTELNEGNYAGAVKLFEQLEARYPYGRYAQQAQLEIAYAYYK
DNEQASAIAAADRFIKLHPNHSNVDYAYYLKGLANFNDDLGLMGIVTEKILNQDMSERDPKASRESFENFKELVTRFPKS
KYTPDAVQRMKHLVNVVALNEVQVARYYMKRGGYIAAANRAQYALKEYPQTPATEEALFIMVKAYDALGMTDLRDDAARV
MQRNFPQSRFLADSTGVDAEPWWKFW

Nucleotide


Download         Length: 801 bp        

>NTDB_id=896395 R5L00_RS03145 WP_317654100.1 705459..706259(-) (comL) [Nitrosospira sp. Is2]
ATGCGACGTAGTTTAACTTTATTTCTGATATTGCTTCTGTCAGCCTGCGGTTTGCTGCCCAAGAACGTGCAGGACTCGAA
GAACTGGTCGGCGAGCAAATATTATTCCGAGGCCAAAACGGAATTGAACGAAGGCAACTATGCCGGCGCGGTCAAGCTGT
TCGAGCAGCTGGAGGCGCGTTATCCTTACGGGCGCTATGCGCAGCAGGCGCAACTCGAGATTGCCTATGCCTATTATAAG
GATAACGAGCAAGCTTCGGCTATTGCCGCGGCGGACCGTTTTATCAAGCTGCACCCCAACCATTCGAACGTGGATTACGC
TTATTACCTTAAGGGGCTTGCCAATTTCAATGACGATCTGGGGCTGATGGGGATCGTGACCGAAAAAATCCTCAATCAGG
ATATGAGCGAGCGCGATCCGAAAGCGTCGCGGGAGTCATTCGAAAATTTCAAGGAACTGGTTACACGTTTCCCCAAGAGC
AAATACACCCCCGATGCGGTGCAACGAATGAAGCACCTGGTCAACGTCGTCGCGCTGAATGAAGTACAGGTTGCGCGCTA
TTACATGAAACGAGGGGGTTATATTGCGGCCGCCAATCGTGCTCAGTATGCACTGAAGGAATACCCCCAGACGCCGGCAA
CGGAGGAGGCGCTATTCATCATGGTAAAAGCATATGATGCACTGGGAATGACAGACTTGCGGGACGATGCGGCTCGCGTG
ATGCAAAGGAATTTCCCTCAGAGCCGGTTTTTGGCTGACTCGACTGGTGTGGATGCCGAACCGTGGTGGAAATTCTGGTA
G

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(30-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

51.698

99.624

0.515
  comL Neisseria gonorrhoeae MS11

50.566

99.624

0.504