Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   R4701_RS08655 Genome accession   NZ_CP137114
Coordinates   1681900..1683132 (+) Length   410 a.a.
NCBI ID   WP_000106350.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 15P3054     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1676900..1688132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4701_RS08625 - 1676970..1677647 (+) 678 WP_000221594.1 DnaD domain-containing protein -
  R4701_RS08630 tpiA 1677746..1678504 (+) 759 WP_000087897.1 triose-phosphate isomerase -
  R4701_RS08635 lytC 1678542..1680047 (+) 1506 WP_078102902.1 choline binding-anchored murein hydrolase LytC -
  R4701_RS08640 - 1680544..1681062 (+) 519 WP_000229874.1 DNA starvation/stationary phase protection protein -
  R4701_RS08645 - 1681192..1681698 (+) 507 WP_000162493.1 dihydrofolate reductase -
  R4701_RS08650 - 1681698..1681868 (+) 171 WP_000442275.1 hypothetical protein -
  R4701_RS08655 clpX 1681900..1683132 (+) 1233 WP_000106350.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  R4701_RS08660 yihA 1683141..1683728 (+) 588 WP_000422599.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  R4701_RS08665 - 1683739..1684119 (+) 381 WP_001140412.1 RidA family protein -
  R4701_RS08670 rapZ 1684171..1685061 (+) 891 WP_000163032.1 RNase adapter RapZ -
  R4701_RS08675 - 1685058..1686035 (+) 978 WP_001231086.1 YvcK family protein -
  R4701_RS08680 whiA 1686032..1686943 (+) 912 WP_000011273.1 DNA-binding protein WhiA -
  R4701_RS08685 - 1686977..1687945 (-) 969 WP_000081008.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45812.38 Da        Isoelectric Point: 4.4578

>NTDB_id=896215 R4701_RS08655 WP_000106350.1 1681900..1683132(+) (clpX) [Streptococcus pneumoniae strain 15P3054]
MSTNRKNDMMVYCSFCGKNQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLADLSEVPKPIELLHILNHYVIGQER
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQVADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKETVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=896215 R4701_RS08655 WP_000106350.1 1681900..1683132(+) (clpX) [Streptococcus pneumoniae strain 15P3054]
ATGTCTACAAATAGAAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAACCAAGAAGAAGTACAAAAAATAAT
TGCTGGCAACAATGCTTTTATTTGTAATGAATGCGTGGAGTTAGCTCAGGAAATCATTCGAGAAGAATTGGTTGAGGAAG
TCTTGGCAGACTTGTCTGAGGTGCCAAAACCAATTGAACTCCTCCATATCTTGAACCACTATGTAATTGGTCAAGAACGT
GCCAAGCGTGCCTTGGCAGTGGCGGTTTATAACCACTACAAACGCATCAATTTCCACGATACACGCGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATTTTGATGATTGGCCCAACTGGTTCAGGGAAAACTTTCCTTGCCCAGACCTTGGCTA
AGAGCTTGAATGTACCTTTTGCTATTGCGGATGCGACAGCTCTGACGGAGGCTGGTTATGTGGGTGAGGATGTGGAAAAT
ATACTCCTCAAACTCTTGCAGGTTGCTGACTTTAACATCGAACGTGCAGAGCGTGGCATTATCTATGTGGATGAAATTGA
CAAGATTGCCAAGAAGAGTGAGAATGTGTCTATCACACGTGATGTTTCTGGTGAAGGGGTGCAACAAGCCCTTCTCAAGA
TTATTGAGGGAACTGTTGCTAGCGTGCCGCCTCAAGGTGGACGCAAACATCCACAACAAGAGATGATTCAAGTGGATACA
AAAAATATCCTCTTCATCGTGGGTGGTGCTTTTGATGGTATTGAAGAAATTGTCAAACAACGTCTGGGTGAAAAAGTCAT
CGGATTTGGTCAAAATAATAAGGCGATTGACGAAAACAGCTCATATATGCAAGAAATCATCGCTGAAGACATTCAAAAAT
TTGGTATTATCCCTGAGTTGATTGGACGCTTGCCTGTTTTTGCGGCTCTTGAGCAATTGACCGTTGATGACTTGGTTCGC
ATCTTGAAAGAGCCAAGAAATGCCTTGGTGAAACAATACCAAACTTTGCTTTCTTATGATGATGTTGAGTTGGAATTTGA
CGACGAAGCCCTTCAAGAGATTGCTAATAAAGCAATCGAACGGAAGACAGGGGCGCGTGGACTTCGCTCCATTATCGAAG
AAACCATGCTAGATGTTATGTTTGAGGTGCCGAGTCAGGAAAATGTGAAATTGGTTCGCATCACTAAAGAAACTGTCGAT
GGAACGGATAAACCGATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.341

100

0.863
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.965

98.049

0.559