Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   R4701_RS02645 Genome accession   NZ_CP137114
Coordinates   526474..527205 (-) Length   243 a.a.
NCBI ID   WP_000889919.1    Uniprot ID   A0A062WNF5
Organism   Streptococcus pneumoniae strain 15P3054     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 521474..532205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4701_RS02615 blpC 522021..522176 (+) 156 WP_000358810.1 quorum-sensing system pheromone BlpC -
  R4701_RS02620 - 522221..523561 (-) 1341 WP_317805979.1 sensor histidine kinase -
  R4701_RS02625 comE/blpR 523575..524312 (-) 738 WP_001219121.1 response regulator transcription factor Regulator
  R4701_RS02630 - 524317..524655 (-) 339 WP_000876675.1 LytTR family DNA-binding domain-containing protein -
  R4701_RS02635 - 524931..525260 (+) 330 WP_000132572.1 hypothetical protein -
  R4701_RS02640 - 525428..526477 (-) 1050 WP_000653766.1 ABC transporter permease -
  R4701_RS02645 pptA 526474..527205 (-) 732 WP_000889919.1 ABC transporter ATP-binding protein Regulator
  R4701_RS02650 - 527273..527683 (+) 411 WP_001278301.1 HIT family protein -
  R4701_RS02655 - 527693..527980 (+) 288 WP_000777760.1 hypothetical protein -
  R4701_RS02660 - 528142..528381 (+) 240 WP_001812223.1 hypothetical protein -
  R4701_RS02665 dnaJ 528703..529839 (-) 1137 WP_001066301.1 molecular chaperone DnaJ -
  R4701_RS02670 - 530241..530597 (-) 357 WP_000114421.1 hypothetical protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27012.49 Da        Isoelectric Point: 4.7737

>NTDB_id=896160 R4701_RS02645 WP_000889919.1 526474..527205(-) (pptA) [Streptococcus pneumoniae strain 15P3054]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=896160 R4701_RS02645 WP_000889919.1 526474..527205(-) (pptA) [Streptococcus pneumoniae strain 15P3054]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAGATGTTCCGTCTGGACCAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGCCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WNF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.614

99.177

0.72
  pptA Streptococcus thermophilus LMD-9

71.784

99.177

0.712