Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   R4707_RS08380 Genome accession   NZ_CP137113
Coordinates   1585736..1586467 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ZGX     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1580736..1591467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4707_RS08355 - 1582356..1582712 (+) 357 WP_000114422.1 hypothetical protein -
  R4707_RS08360 dnaJ 1583114..1584250 (+) 1137 WP_001066301.1 molecular chaperone DnaJ -
  R4707_RS08365 - 1584572..1584799 (-) 228 WP_130884158.1 hypothetical protein -
  R4707_RS08370 - 1584961..1585248 (-) 288 WP_000777760.1 hypothetical protein -
  R4707_RS08375 - 1585258..1585668 (-) 411 WP_001278301.1 HIT family protein -
  R4707_RS08380 pptA 1585736..1586467 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  R4707_RS08385 - 1586464..1587513 (+) 1050 WP_081543022.1 ABC transporter permease -
  R4707_RS08390 - 1587681..1588010 (-) 330 WP_000132583.1 hypothetical protein -
  R4707_RS08395 - 1588287..1588625 (+) 339 WP_000682136.1 LytTR family DNA-binding domain-containing protein -
  R4707_RS08400 comE/blpR 1588630..1589367 (+) 738 WP_001219137.1 LytTR family DNA-binding domain-containing protein Regulator
  R4707_RS08405 - 1589381..1590721 (+) 1341 WP_001099894.1 sensor histidine kinase -
  R4707_RS08410 blpC 1590765..1590920 (-) 156 WP_000358812.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=896131 R4707_RS08380 WP_000889923.1 1585736..1586467(+) (pptA) [Streptococcus pneumoniae strain ZGX]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=896131 R4707_RS08380 WP_000889923.1 1585736..1586467(+) (pptA) [Streptococcus pneumoniae strain ZGX]
ATGTTAGAAATTAAAAACCTGACAGGTGGTTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708