Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   R4707_RS00510 Genome accession   NZ_CP137113
Coordinates   98660..99469 (-) Length   269 a.a.
NCBI ID   WP_050103757.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ZGX     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 93660..104469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4707_RS00490 - 96018..97004 (+) 987 WP_081542829.1 L-lactate dehydrogenase -
  R4707_RS00495 - 97281..98024 (-) 744 Protein_98 potassium channel family protein -
  R4707_RS00500 - 98071..98325 (-) 255 WP_001812387.1 type II toxin-antitoxin system RelE/ParE family toxin -
  R4707_RS00505 relB 98327..98569 (-) 243 WP_000208080.1 type II toxin-antitoxin system RelB family antitoxin -
  R4707_RS00510 vicX 98660..99469 (-) 810 WP_050103757.1 MBL fold metallo-hydrolase Regulator
  R4707_RS00515 micB 99471..100820 (-) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  R4707_RS00520 micA 100813..101517 (-) 705 WP_000722076.1 response regulator YycF Regulator
  R4707_RS00525 mutY 101573..102748 (-) 1176 WP_000886145.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29944.94 Da        Isoelectric Point: 6.1743

>NTDB_id=896065 R4707_RS00510 WP_050103757.1 98660..99469(-) (vicX) [Streptococcus pneumoniae strain ZGX]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLVQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=896065 R4707_RS00510 WP_050103757.1 98660..99469(-) (vicX) [Streptococcus pneumoniae strain ZGX]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTAGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGTAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGTTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773