Detailed information NTG0896060

Bioinformatically predicted

Overview

• Name: scnR
• Type: Regulator
• Locus tag: LLNCDO184_RS00945
• Genome accession: NZ_CP155124
• Coordinates: 167017..167721 (+)
• Length: 234 a.a.
• NCBI ID: WP_047686051.1
• Uniprot ID: -
• Organism: Lactococcus lactis subsp. lactis strain NCDO184
• Function: regulate comX expression (predicted from homology) Competence regulation

Genomic Context

Location: 162017..172721

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LLNCDO184_RS00910 (LLNCDO184_00905)	-	162181..162603 (-)	423	WP_003108064.1	cupin domain-containing protein	-
LLNCDO184_RS00915 (LLNCDO184_00910)	-	162819..163778 (+)	960	WP_153951025.1	IS30-like element IS6770 family transposase	-
LLNCDO184_RS00920 (LLNCDO184_00915)	-	163973..164182 (+)	210	WP_047686044.1	hypothetical protein	-
LLNCDO184_RS00925 (LLNCDO184_00920)	-	164355..164639 (-)	285	WP_032398590.1	hypothetical protein	-
LLNCDO184_RS00930 (LLNCDO184_00925)	-	164644..165396 (-)	753	WP_032398591.1	ABC transporter permease	-
LLNCDO184_RS00935 (LLNCDO184_00930)	-	165393..166112 (-)	720	WP_032398592.1	ABC transporter permease	-
LLNCDO184_RS00940 (LLNCDO184_00935)	-	166112..166867 (-)	756	WP_047686049.1	ABC transporter ATP-binding protein	-
LLNCDO184_RS00945 (LLNCDO184_00940)	scnR	167017..167721 (+)	705	WP_047686051.1	response regulator transcription factor	Regulator
LLNCDO184_RS00950 (LLNCDO184_00945)	-	167723..169120 (+)	1398	WP_081144407.1	sensor histidine kinase KdpD	-
LLNCDO184_RS00955 (LLNCDO184_00950)	-	169424..170104 (-)	681	WP_396421810.1	IS6 family transposase	-
LLNCDO184_RS00960 (LLNCDO184_00955)	-	170177..170425 (+)	249	Protein_179	IS3 family transposase	-
LLNCDO184_RS00965 (LLNCDO184_00960)	-	170657..170860 (-)	204	WP_104143309.1	hypothetical protein	-
LLNCDO184_RS00970 (LLNCDO184_00965)	-	171043..171501 (+)	459	WP_153951058.1	TFIIB-type zinc ribbon-containing protein	-
LLNCDO184_RS00975 (LLNCDO184_00970)	-	171491..172306 (+)	816	WP_104143315.1	hypothetical protein	-

Sequence

Protein

• Length: 234 a.a.
• Molecular weight: 26784.23 Da
• Isoelectric Point: 5.2412

>NTDB_id=896060 LLNCDO184_RS00945 WP_047686051.1 167017..167721(+) (scnR) [Lactococcus lactis subsp. lactis strain NCDO184]
MSIEYLKKKRILLVDDEPKLLDMVVSILKENGFEYIYTAQKVEEAVVVAEEYLPELAILDVMLPDGDGFSLMKRLRKKGN
YPILFLTARGEDEDKLDGLGLGADDYIVKPFLPKELIFRITAILKRSYKDDNPFVQLQNSKIDFERAEVIKDGEQILLTA
KEHILLSILYRNAGRIITIDVLCKELWGDNYFGYENSLMAHISRVRQKIEKNPSQPVSLITVKGLGYKLLTEAN

Nucleotide

• Length: 705 bp

>NTDB_id=896060 LLNCDO184_RS00945 WP_047686051.1 167017..167721(+) (scnR) [Lactococcus lactis subsp. lactis strain NCDO184]
ATGAGTATAGAGTACTTAAAGAAGAAACGTATTTTGTTGGTTGACGATGAACCTAAATTACTGGACATGGTTGTTTCGAT
ATTAAAAGAAAATGGATTTGAATATATTTATACTGCTCAAAAAGTAGAAGAGGCTGTAGTTGTAGCTGAAGAATACTTAC
CTGAGCTTGCCATACTTGATGTTATGCTTCCAGATGGAGATGGATTTTCTTTAATGAAAAGGCTAAGAAAAAAGGGAAAT
TATCCAATCTTATTCTTAACCGCTCGTGGAGAAGACGAGGATAAACTCGATGGACTTGGACTAGGAGCAGACGATTACAT
CGTCAAACCTTTTTTACCTAAAGAATTAATTTTTCGTATTACAGCCATCCTGAAAAGAAGCTATAAAGATGACAATCCCT
TTGTTCAATTACAAAATAGTAAAATCGATTTTGAACGTGCTGAAGTGATAAAAGATGGCGAGCAGATTTTACTAACAGCG
AAAGAACACATTCTACTTTCGATTCTATACCGTAATGCAGGGCGCATTATAACAATCGATGTCCTATGTAAAGAACTGTG
GGGAGATAATTATTTTGGTTATGAAAACTCACTAATGGCTCATATCAGTCGCGTCCGCCAAAAGATTGAAAAAAATCCTT
CTCAACCCGTTTCATTGATCACGGTTAAAGGACTTGGATATAAGCTTCTTACGGAGGCAAATTAA

Domains

Predicted by InterProScan.

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (153-229)

• Response regulator receiver domain (Response_reg) (11-120)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
scnR	Streptococcus mutans UA159	48.43	95.299	0.462
micA	Streptococcus pneumoniae Cp1015	37.179	100	0.372