Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   R4700_RS08010 Genome accession   NZ_CP137112
Coordinates   1558697..1559428 (+) Length   243 a.a.
NCBI ID   WP_001866897.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 02H2025     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1553697..1564428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4700_RS07980 dnaK 1553817..1555640 (+) 1824 WP_000034662.1 molecular chaperone DnaK -
  R4700_RS07985 - 1555651..1556055 (+) 405 WP_000343113.1 hypothetical protein -
  R4700_RS07990 dnaJ 1556399..1557535 (+) 1137 WP_001066301.1 molecular chaperone DnaJ -
  R4700_RS07995 - 1557564..1557740 (-) 177 WP_277770848.1 hypothetical protein -
  R4700_RS08000 - 1557922..1558209 (-) 288 WP_000777760.1 hypothetical protein -
  R4700_RS08005 - 1558219..1558629 (-) 411 WP_001278301.1 HIT family protein -
  R4700_RS08010 pptA 1558697..1559428 (+) 732 WP_001866897.1 ABC transporter ATP-binding protein Regulator
  R4700_RS08015 - 1559425..1560474 (+) 1050 WP_288160555.1 ABC transporter permease -
  R4700_RS08020 - 1560642..1560971 (-) 330 WP_088795779.1 helicase BlpT -
  R4700_RS08025 - 1561247..1561585 (+) 339 WP_000682121.1 LytTR family DNA-binding domain-containing protein -
  R4700_RS08030 comE/blpR 1561590..1562327 (+) 738 WP_001219126.1 response regulator transcription factor Regulator
  R4700_RS08035 - 1562341..1563681 (+) 1341 WP_277770850.1 sensor histidine kinase -
  R4700_RS08040 blpC 1563752..1563880 (-) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27030.52 Da        Isoelectric Point: 4.7737

>NTDB_id=896052 R4700_RS08010 WP_001866897.1 1558697..1559428(+) (pptA) [Streptococcus pneumoniae strain 02H2025]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTMQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=896052 R4700_RS08010 WP_001866897.1 1558697..1559428(+) (pptA) [Streptococcus pneumoniae strain 02H2025]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTATGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAGATGTTCCGTCTGGACCAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTAGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.614

99.177

0.72
  pptA Streptococcus thermophilus LMD-9

71.784

99.177

0.712