Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   R4706_RS02965 Genome accession   NZ_CP137111
Coordinates   595103..595834 (-) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 17023     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 590103..600834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4706_RS02935 blpC 590651..590779 (+) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -
  R4706_RS02940 - 590850..592190 (-) 1341 WP_001017646.1 sensor histidine kinase -
  R4706_RS02945 comE/blpR 592204..592941 (-) 738 WP_001219120.1 LytTR family DNA-binding domain-containing protein Regulator
  R4706_RS02950 - 592946..593284 (-) 339 WP_000876675.1 LytTR family DNA-binding domain-containing protein -
  R4706_RS02955 - 593560..593889 (+) 330 WP_000132572.1 hypothetical protein -
  R4706_RS02960 - 594057..595106 (-) 1050 WP_044727698.1 ABC transporter permease -
  R4706_RS02965 pptA 595103..595834 (-) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  R4706_RS02970 - 595902..596312 (+) 411 WP_001278301.1 HIT family protein -
  R4706_RS02975 - 596322..596609 (+) 288 WP_000777760.1 hypothetical protein -
  R4706_RS02980 dnaJ 596976..598112 (-) 1137 WP_001066301.1 molecular chaperone DnaJ -
  R4706_RS02985 - 598388..598741 (-) 354 WP_000115730.1 hypothetical protein -
  R4706_RS02990 dnaK 598754..600577 (-) 1824 WP_000034662.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=895929 R4706_RS02965 WP_000889923.1 595103..595834(-) (pptA) [Streptococcus pneumoniae strain 17023]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=895929 R4706_RS02965 WP_000889923.1 595103..595834(-) (pptA) [Streptococcus pneumoniae strain 17023]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708