Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   R4712_RS07280 Genome accession   NZ_CP137110
Coordinates   1413151..1414218 (+) Length   355 a.a.
NCBI ID   WP_000159553.1    Uniprot ID   A0A0T8CF10
Organism   Streptococcus pneumoniae strain 16H2041     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1408151..1419218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4712_RS07265 amiA3 1408674..1410653 (+) 1980 WP_000742234.1 peptide ABC transporter substrate-binding protein Regulator
  R4712_RS07270 amiC 1410720..1412216 (+) 1497 WP_000759902.1 ABC transporter permease Regulator
  R4712_RS07275 amiD 1412216..1413142 (+) 927 WP_000103697.1 oligopeptide ABC transporter permease OppC Regulator
  R4712_RS07280 amiE 1413151..1414218 (+) 1068 WP_000159553.1 ABC transporter ATP-binding protein Regulator
  R4712_RS07285 amiF 1414229..1415155 (+) 927 WP_044812815.1 ATP-binding cassette domain-containing protein Regulator
  R4712_RS07290 - 1415230..1416556 (-) 1327 Protein_1395 ISL3 family transposase -
  R4712_RS07295 treR 1416712..1417422 (-) 711 WP_000760673.1 trehalose operon repressor Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39437.04 Da        Isoelectric Point: 4.8002

>NTDB_id=895893 R4712_RS07280 WP_000159553.1 1413151..1414218(+) (amiE) [Streptococcus pneumoniae strain 16H2041]
MTKEKNVILTARDIVVEFDVRDKVLTAIRGVSLELVEGEVLALVGESGSGKSVLTKTFTGMLEENGRIAQGSIDYRGQDL
TALSSHKDWEQIRGAKIATIFQDPMTSLDPIKTIGSQITEVIVKHQGKTAKEAKELAIDYMNKVGIPDADRRFNEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQIIDLLKSLQNEYHFTTIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEVFYDPCHPYTWSLLSSLPQLADDKGDLYSIPGTPPSLYTDLKGDAFALRSDYAMQIDFEQKAPQFSVSETHWAK
TWLLHEDAPKVEKPAVIANLHDKIREKMGFAHLAD

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=895893 R4712_RS07280 WP_000159553.1 1413151..1414218(+) (amiE) [Streptococcus pneumoniae strain 16H2041]
ATGACAAAAGAAAAAAATGTAATTTTGACTGCTCGCGATATTGTCGTGGAATTTGACGTTCGTGACAAAGTATTGACAGC
CATTCGCGGCGTTTCCCTTGAACTAGTCGAAGGAGAAGTATTAGCCTTGGTAGGTGAGTCAGGATCAGGTAAATCTGTTT
TGACAAAGACCTTCACAGGTATGCTCGAAGAAAATGGTCGCATTGCCCAAGGTAGTATTGACTACCGTGGTCAGGACTTG
ACAGCTTTATCTTCTCACAAGGATTGGGAACAAATTCGTGGTGCTAAGATTGCGACTATCTTCCAGGACCCAATGACTAG
TTTGGACCCCATTAAAACAATTGGTAGTCAGATTACAGAAGTTATTGTAAAACACCAAGGAAAAACAGCTAAAGAAGCGA
AAGAATTGGCCATTGACTACATGAATAAGGTTGGCATTCCAGACGCAGATAGACGTTTTAATGAATACCCATTCCAATAT
TCTGGAGGAATGCGTCAACGTATCGTTATTGCTATTGCCCTTGCCTGCCGACCTGATGTCTTGATCTGTGATGAGCCAAC
AACTGCCTTGGATGTAACTATTCAAGCTCAGATTATTGATTTGCTAAAATCTTTACAAAACGAGTATCATTTCACAACAA
TCTTTATTACCCACGACCTTGGTGTGGTGGCAAGTATTGCGGATAAGGTAGCGGTTATGTATGCAGGAGAAATCGTTGAG
TATGGAACTGTTGAGGAAGTCTTCTATGACCCTTGCCATCCATATACATGGAGTCTCTTGTCTAGCTTGCCTCAGCTTGC
TGATGATAAAGGGGATCTTTACTCAATCCCAGGAACACCTCCGTCACTTTATACTGACCTGAAAGGGGATGCTTTTGCCT
TGCGTTCTGACTACGCAATGCAGATTGACTTCGAACAAAAAGCTCCTCAATTCTCAGTATCAGAGACACATTGGGCTAAA
ACTTGGCTTCTTCATGAGGATGCTCCAAAAGTAGAAAAACCAGCTGTGATTGCAAATCTCCATGATAAGATCCGTGAAAA
AATGGGATTTGCCCATCTGGCTGACTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T8CF10

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

88.451

100

0.885
  amiE Streptococcus thermophilus LMG 18311

86.761

100

0.868
  amiE Streptococcus thermophilus LMD-9

86.761

100

0.868
  oppD Streptococcus mutans UA159

54.545

99.155

0.541