Detailed information NTG0895889

Bioinformatically predicted

Overview

• Name: ssbB/cilA
• Type: Machinery gene
• Locus tag: R4712_RS07055
• Genome accession: NZ_CP137110
• Coordinates: 1381024..1381419 (+)
• Length: 131 a.a.
• NCBI ID: WP_000282467.1
• Uniprot ID: A0A098Z0L0
• Organism: Streptococcus pneumoniae strain 16H2041
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1376024..1386419

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R4712_RS07005	-	1376159..1376521 (+)	363	WP_000078804.1	DUF2200 domain-containing protein	-
R4712_RS07010	-	1376518..1377021 (+)	504	WP_000800943.1	phosphatase PAP2 family protein	-
R4712_RS07015	-	1377135..1377581 (+)	447	WP_000776589.1	LytTR family DNA-binding domain-containing protein	-
R4712_RS07020	-	1377586..1378260 (+)	675	WP_044812776.1	LiaF transmembrane domain-containing protein	-
R4712_RS07025	-	1378421..1378612 (+)	192	WP_000291826.1	cell wall-binding protein	-
R4712_RS07030	-	1378637..1378699 (+)	63	WP_219300018.1	hypothetical protein	-
R4712_RS07035	-	1378897..1379196 (+)	300	WP_001013974.1	DUF4651 domain-containing protein	-
R4712_RS07040	-	1379193..1379510 (+)	318	WP_000615767.1	thioredoxin family protein	-
R4712_RS07045	ytpR	1379526..1380152 (+)	627	WP_000578309.1	YtpR family tRNA-binding protein	-
R4712_RS07050	-	1380185..1380946 (+)	762	WP_001107745.1	SDR family NAD(P)-dependent oxidoreductase	-
R4712_RS07055	ssbB/cilA	1381024..1381419 (+)	396	WP_000282467.1	single-stranded DNA-binding protein	Machinery gene
R4712_RS07060	groES	1381575..1381859 (+)	285	WP_000917304.1	co-chaperone GroES	-
R4712_RS07065	groL	1381875..1383497 (+)	1623	WP_000031573.1	chaperonin GroEL	-
R4712_RS07070	-	1383635..1384390 (+)	756	Protein_1373	epoxyqueuosine reductase QueH	-
R4712_RS07075	-	1384836..1385609 (+)	774	WP_044792121.1	class I SAM-dependent methyltransferase	-
R4712_RS07080	-	1385622..1385960 (+)	339	WP_001809290.1	helix-turn-helix transcriptional regulator	-

Sequence

Protein

• Length: 131 a.a.
• Molecular weight: 14925.89 Da
• Isoelectric Point: 5.9409

>NTDB_id=895889 R4712_RS07055 WP_000282467.1 1381024..1381419(+) (ssbB/cilA) [Streptococcus pneumoniae strain 16H2041]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide

• Length: 396 bp

>NTDB_id=895889 R4712_RS07055 WP_000282467.1 1381024..1381419(+) (ssbB/cilA) [Streptococcus pneumoniae strain 16H2041]
ATGTATAATAAAGTTATCATGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC
GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTTAATATGGTTCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGTCAGATGAATTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCTATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-101)

3D structure

• AlphaFold DB: A0A098Z0L0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbB/cilA	Streptococcus pneumoniae D39	100	100	1
ssbB/cilA	Streptococcus pneumoniae Rx1	100	100	1
ssbB/cilA	Streptococcus pneumoniae R6	100	100	1
ssbB/cilA	Streptococcus pneumoniae TIGR4	99.237	100	0.992
ssbB/cilA	Streptococcus mitis SK321	98.473	100	0.985
ssbB/cilA	Streptococcus mitis NCTC 12261	98.473	100	0.985
ssbA	Streptococcus mutans UA159	74.809	100	0.748
ssbB	Streptococcus sobrinus strain NIDR 6715-7	70.229	100	0.702
ssbB	Lactococcus lactis subsp. cremoris KW2	59.821	85.496	0.511
ssbA	Bacillus subtilis subsp. subtilis str. 168	50.943	80.916	0.412
ssb	Latilactobacillus sakei subsp. sakei 23K	46.903	86.26	0.405