Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   R4712_RS02895 Genome accession   NZ_CP137110
Coordinates   579575..580306 (-) Length   243 a.a.
NCBI ID   WP_000889919.1    Uniprot ID   A0A062WNF5
Organism   Streptococcus pneumoniae strain 16H2041     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 574575..585306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4712_RS02865 blpC 575123..575251 (+) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -
  R4712_RS02870 - 575322..576662 (-) 1341 WP_001017642.1 sensor histidine kinase -
  R4712_RS02875 comE/blpR 576676..577413 (-) 738 WP_001219120.1 LytTR family DNA-binding domain-containing protein Regulator
  R4712_RS02880 - 577418..577756 (-) 339 WP_000876675.1 LytTR family DNA-binding domain-containing protein -
  R4712_RS02885 - 578032..578361 (+) 330 WP_000132572.1 hypothetical protein -
  R4712_RS02890 - 578529..579578 (-) 1050 WP_000653771.1 ABC transporter permease -
  R4712_RS02895 pptA 579575..580306 (-) 732 WP_000889919.1 ABC transporter ATP-binding protein Regulator
  R4712_RS02900 - 580374..580784 (+) 411 WP_044791647.1 HIT family protein -
  R4712_RS02905 - 580794..581081 (+) 288 WP_000777753.1 hypothetical protein -
  R4712_RS02910 - 581244..581483 (+) 240 WP_001813906.1 hypothetical protein -
  R4712_RS02915 dnaJ 581818..582954 (-) 1137 WP_001066301.1 molecular chaperone DnaJ -
  R4712_RS02920 - 583227..583595 (-) 369 WP_044791649.1 hypothetical protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27012.49 Da        Isoelectric Point: 4.7737

>NTDB_id=895849 R4712_RS02895 WP_000889919.1 579575..580306(-) (pptA) [Streptococcus pneumoniae strain 16H2041]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=895849 R4712_RS02895 WP_000889919.1 579575..580306(-) (pptA) [Streptococcus pneumoniae strain 16H2041]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAGATGTTCCGTCTGGACCAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WNF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.614

99.177

0.72
  pptA Streptococcus thermophilus LMD-9

71.784

99.177

0.712