Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   R4704_RS08185 Genome accession   NZ_CP137109
Coordinates   1569369..1570100 (+) Length   243 a.a.
NCBI ID   WP_000889921.1    Uniprot ID   A0AAI8ZWM3
Organism   Streptococcus pneumoniae strain 11012     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1564369..1575100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4704_RS08160 - 1566020..1566424 (+) 405 WP_000343113.1 hypothetical protein -
  R4704_RS08165 dnaJ 1566768..1567904 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  R4704_RS08170 - 1568238..1568432 (-) 195 WP_001808905.1 hypothetical protein -
  R4704_RS08175 - 1568594..1568881 (-) 288 WP_000777753.1 hypothetical protein -
  R4704_RS08180 - 1568891..1569301 (-) 411 WP_001278301.1 HIT family protein -
  R4704_RS08185 pptA 1569369..1570100 (+) 732 WP_000889921.1 ABC transporter ATP-binding protein Regulator
  R4704_RS08190 - 1570097..1571146 (+) 1050 WP_000653771.1 ABC transporter permease -
  R4704_RS08195 - 1571314..1571643 (-) 330 WP_000132572.1 hypothetical protein -
  R4704_RS08200 - 1571920..1572258 (+) 339 WP_000682133.1 LytTR family DNA-binding domain-containing protein -
  R4704_RS08205 comE/blpR 1572263..1573000 (+) 738 WP_001219122.1 LytTR family DNA-binding domain-containing protein Regulator
  R4704_RS08210 - 1573013..1574353 (+) 1341 WP_000275285.1 sensor histidine kinase -
  R4704_RS08215 blpC 1574398..1574553 (-) 156 WP_000358814.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26998.46 Da        Isoelectric Point: 4.7792

>NTDB_id=895820 R4704_RS08185 WP_000889921.1 1569369..1570100(+) (pptA) [Streptococcus pneumoniae strain 11012]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVADPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=895820 R4704_RS08185 WP_000889921.1 1569369..1570100(+) (pptA) [Streptococcus pneumoniae strain 11012]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGCGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

71.784

99.177

0.712
  pptA Streptococcus thermophilus LMD-9

70.954

99.177

0.704