Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   R4704_RS05630 Genome accession   NZ_CP137109
Coordinates   1074133..1074891 (+) Length   252 a.a.
NCBI ID   WP_000410380.1    Uniprot ID   A0A6G2D2R9
Organism   Streptococcus pneumoniae strain 11012     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1069133..1079891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4704_RS05600 comE 1069730..1070482 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  R4704_RS05605 comD/comD1 1070479..1071804 (-) 1326 WP_033705078.1 competence system sensor histidine kinase ComD Regulator
  R4704_RS05610 comC/comC1 1071825..1071950 (-) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  R4704_RS05620 rlmH 1072232..1072711 (-) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  R4704_RS05625 htrA 1072894..1074075 (+) 1182 WP_000681597.1 S1C family serine protease Regulator
  R4704_RS05630 spo0J 1074133..1074891 (+) 759 WP_000410380.1 ParB/RepB/Spo0J family partition protein Regulator
  R4704_RS05635 dnaA 1075104..1076465 (+) 1362 WP_000660615.1 chromosomal replication initiator protein DnaA -
  R4704_RS05640 dnaN 1076624..1077760 (+) 1137 WP_033705076.1 DNA polymerase III subunit beta -
  R4704_RS05645 - 1077825..1078019 (+) 195 WP_000285194.1 DUF951 domain-containing protein -
  R4704_RS05650 ychF 1078103..1079218 (+) 1116 WP_001218707.1 redox-regulated ATPase YchF -
  R4704_RS05655 pth 1079289..1079858 (+) 570 WP_000163932.1 aminoacyl-tRNA hydrolase -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29179.54 Da        Isoelectric Point: 9.0305

>NTDB_id=895809 R4704_RS05630 WP_000410380.1 1074133..1074891(+) (spo0J) [Streptococcus pneumoniae strain 11012]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLEALLTEKKQKKQQKTNYFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=895809 R4704_RS05630 WP_000410380.1 1074133..1074891(+) (spo0J) [Streptococcus pneumoniae strain 11012]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
ACTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAGATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAGCTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATTATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGATTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(144-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G2D2R9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.593

100

0.508