Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   R4715_RS09080 Genome accession   NZ_CP137108
Coordinates   1748789..1750021 (+) Length   410 a.a.
NCBI ID   WP_001814787.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain OXT     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1743789..1755021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4715_RS09050 - 1743852..1744529 (+) 678 WP_000221584.1 DnaD domain-containing protein -
  R4715_RS09055 tpiA 1744628..1745386 (+) 759 WP_000087897.1 triose-phosphate isomerase -
  R4715_RS09060 lytC 1745424..1746929 (+) 1506 WP_013193470.1 choline binding-anchored murein hydrolase LytC -
  R4715_RS09065 - 1747426..1747944 (+) 519 WP_000229868.1 DNA starvation/stationary phase protection protein -
  R4715_RS09070 - 1748076..1748582 (+) 507 WP_000162475.1 dihydrofolate reductase -
  R4715_RS09075 - 1748582..1748752 (+) 171 WP_000442260.1 hypothetical protein -
  R4715_RS09080 clpX 1748789..1750021 (+) 1233 WP_001814787.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  R4715_RS09085 yihA 1750030..1750617 (+) 588 WP_000422599.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  R4715_RS09090 - 1750628..1751008 (+) 381 WP_001140412.1 RidA family protein -
  R4715_RS09095 rapZ 1751060..1751950 (+) 891 WP_000163033.1 RNase adapter RapZ -
  R4715_RS09100 - 1751947..1752924 (+) 978 WP_001231086.1 YvcK family protein -
  R4715_RS09105 whiA 1752921..1753832 (+) 912 WP_000011306.1 DNA-binding protein WhiA -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45725.30 Da        Isoelectric Point: 4.4775

>NTDB_id=895745 R4715_RS09080 WP_001814787.1 1748789..1750021(+) (clpX) [Streptococcus pneumoniae strain OXT]
MPTTRNNDMMVYCSFCGKSQEEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQVADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELKFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKETVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=895745 R4715_RS09080 WP_001814787.1 1748789..1750021(+) (clpX) [Streptococcus pneumoniae strain OXT]
ATGCCTACAACTAGGAATAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAGCCAAGAAGAAGTACAAAAAATAAT
CGCAGGGAACAACGCCTTTATCTGTAATGAATGTGTGGAGTTAGCCCAGGAAATCATTCGTGAGGAGTTGGCTGAGGAAG
TTTTGGCAGACTTGTCTGAAGTTCCAAAACCAATCGAACTTCTCCATATCTTGAACCACTATGTAATCGGTCAAGATCGT
GCCAAACGGGCCTTAGCAGTGGCGGTTTACAACCACTACAAACGCATCAATTTCCACGATACGCGTGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATCTTGATGATTGGCCCAACTGGTTCAGGGAAAACTTTCCTTGCTCAGACCTTGGCTA
AGAGCTTGAATGTACCTTTTGCTATTGCGGATGCGACAGCTCTGACGGAGGCTGGTTATGTGGGTGAGGATGTGGAAAAT
ATCCTTCTCAAACTCTTGCAGGTTGCTGACTTTAACATCGAACGTGCAGAGCGTGGCATTATCTATGTGGATGAAATTGA
CAAGATTGCCAAGAAGAGTGAGAATGTGTCTATCACACGTGATGTTTCTGGTGAAGGGGTGCAACAAGCCCTTCTCAAGA
TTATCGAGGGAACTGTTGCTAGCGTGCCGCCTCAAGGTGGACGCAAACATCCACAACAAGAGATGATTCAAGTGGATACA
AAAAATATCCTCTTCATCGTGGGTGGTGCTTTTGATGGTATTGAAGAAATTGTCAAACAACGTCTGGGTGAAAAAGTCAT
CGGATTTGGTCAAAACAATAAGGCGATTGACGAAAACAGCTCATACATGCAAGAAATCATCGCTGAAGACATTCAAAAAT
TTGGTATTATCCCTGAGTTGATTGGACGCTTGCCTGTTTTTGCGGCTCTTGAGCAATTGACCGTTGATGACTTGGTTCGC
ATCTTGAAAGAGCCAAGAAATGCCTTGGTGAAACAATACCAAACCTTGCTTTCTTATGATGATGTTGAGTTGAAATTTGA
CGACGAAGCCCTTCAAGAGATTGCTAATAAAGCAATCGAACGGAAGACAGGGGCGCGTGGACTTCGCTCCATTATCGAAG
AAACCATGCTAGATGTTATGTTTGAGGTGCCGAGTCAGGAAAATGTGAAATTGGTTCGCATCACTAAAGAAACTGTCGAT
GGAACGGATAAACCGATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.098

100

0.861
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.463

98.049

0.563