Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   ABC967_RS05910 Genome accession   NZ_CP155059
Coordinates   1237872..1239023 (+) Length   383 a.a.
NCBI ID   WP_000020352.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC133-MSSA     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1232872..1244023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC967_RS05885 (ABC967_05885) - 1233699..1234982 (+) 1284 Protein_1149 pitrilysin family protein -
  ABC967_RS05890 (ABC967_05890) - 1234986..1235690 (+) 705 WP_000646222.1 SDR family NAD(P)-dependent oxidoreductase -
  ABC967_RS05895 (ABC967_05895) - 1235795..1236622 (+) 828 WP_000214889.1 YmfK family protein -
  ABC967_RS05900 (ABC967_05900) - 1236641..1237033 (+) 393 WP_000859443.1 RodZ family helix-turn-helix domain-containing protein -
  ABC967_RS05905 (ABC967_05905) pgsA 1237067..1237645 (+) 579 WP_001025095.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABC967_RS05910 (ABC967_05910) cinA 1237872..1239023 (+) 1152 WP_000020352.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  ABC967_RS05915 (ABC967_05915) recA 1239188..1240231 (+) 1044 WP_000368166.1 recombinase RecA Machinery gene
  ABC967_RS05920 (ABC967_05920) rny 1240585..1242144 (+) 1560 WP_001050913.1 ribonuclease Y -
  ABC967_RS05925 (ABC967_05925) - 1242441..1242656 (-) 216 WP_000026308.1 hypothetical protein -
  ABC967_RS05930 (ABC967_05930) - 1242830..1243627 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43203.55 Da        Isoelectric Point: 6.3213

>NTDB_id=895652 ABC967_RS05910 WP_000020352.1 1237872..1239023(+) (cinA) [Staphylococcus aureus strain CC133-MSSA]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETVLIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNEKFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNLEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=895652 ABC967_RS05910 WP_000020352.1 1237872..1239023(+) (cinA) [Staphylococcus aureus strain CC133-MSSA]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAATGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAGCAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTA
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACACTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAGTATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCAGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAGCAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCGTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAAATTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTATTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
AGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTTATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.389

100

0.433