Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/comX2   Type   Regulator
Locus tag   R4711_RS06805 Genome accession   NZ_CP137107
Coordinates   1344740..1345219 (+) Length   159 a.a.
NCBI ID   WP_000588874.1    Uniprot ID   A0AA44S6A3
Organism   Streptococcus pneumoniae strain 15H4024     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1339740..1350219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4711_RS06780 - 1341924..1342049 (-) 126 WP_001258158.1 hypothetical protein -
  R4711_RS06785 - 1342122..1343525 (-) 1404 WP_055386821.1 ISNCY-like element IS1202 family transposase -
  R4711_RS06790 rpmG 1343689..1343841 (+) 153 WP_001809375.1 50S ribosomal protein L33 -
  R4711_RS06795 secE 1343851..1344027 (+) 177 WP_001210991.1 preprotein translocase subunit SecE -
  R4711_RS06800 nusG 1344082..1344618 (+) 537 WP_000376736.1 transcription termination/antitermination protein NusG -
  R4711_RS06805 comX/comX2 1344740..1345219 (+) 480 WP_000588874.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 19845.50 Da        Isoelectric Point: 7.3795

>NTDB_id=895651 R4711_RS06805 WP_000588874.1 1344740..1345219(+) (comX/comX2) [Streptococcus pneumoniae strain 15H4024]
MIKELYEEVQGTVYKCRNEYYLHLWELSDWDQEGMLCLHELISREEGLVDDIPRLRKYFKTKFRNRILDYIRKQESQKRK
YDKEPYEEVGELSHRISEGGLWLDDYYLFHETLRDYRNKQSKEKQEELERVLSNERFRGRQRVLRDLRIVFKEFTIRTH

Nucleotide


Download         Length: 480 bp        

>NTDB_id=895651 R4711_RS06805 WP_000588874.1 1344740..1345219(+) (comX/comX2) [Streptococcus pneumoniae strain 15H4024]
ATGATTAAAGAATTGTATGAAGAAGTCCAAGGGACTGTGTATAAGTGTAGAAATGAATATTACCTTCATTTATGGGAATT
ATCGGATTGGGACCAAGAAGGCATGCTCTGCTTACATGAATTGATTAGTAGAGAAGAAGGACTGGTAGACGATATTCCAC
GTTTAAGGAAATATTTCAAAACCAAGTTTCGAAATCGAATTTTAGACTATATCCGTAAGCAGGAAAGTCAGAAGCGTAAA
TACGATAAAGAACCCTATGAAGAAGTGGGTGAGCTCAGTCATCGTATAAGTGAGGGGGGTCTCTGGCTAGATGATTATTA
TCTCTTTCATGAAACACTAAGAGATTATAGAAACAAACAAAGTAAAGAGAAACAAGAAGAACTAGAACGTGTCTTAAGCA
ATGAACGATTTCGAGGGCGTCAAAGAGTATTAAGAGACTTACGCATTGTGTTTAAGGAGTTTACTATCCGTACCCACTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/comX2 Streptococcus pneumoniae Rx1

98.742

100

0.987
  comX/comX1 Streptococcus pneumoniae Rx1

98.742

100

0.987
  comX/comX2 Streptococcus pneumoniae D39

98.742

100

0.987
  comX/comX1 Streptococcus pneumoniae D39

98.742

100

0.987
  comX/comX2 Streptococcus pneumoniae R6

98.742

100

0.987
  comX/comX1 Streptococcus pneumoniae R6

98.742

100

0.987
  comX/comX2 Streptococcus pneumoniae TIGR4

98.113

100

0.981
  comX/comX1 Streptococcus pneumoniae TIGR4

98.113

100

0.981
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

91.195

100

0.912
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

91.195

100

0.912
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

89.308

100

0.893
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

87.975

99.371

0.874
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

48.718

98.113

0.478
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

48.718

98.113

0.478
  comX/sigX Streptococcus suis D9

47.02

94.969

0.447
  comX/sigX Streptococcus suis isolate S10

47.02

94.969

0.447
  comX/sigX Streptococcus suis P1/7

47.02

94.969

0.447
  comX/sigX Streptococcus mutans UA159

44.667

94.34

0.421
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

39.216

96.226

0.377
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

39.216

96.226

0.377
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

40

94.34

0.377
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

40

94.34

0.377
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

40

94.34

0.377
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

40

94.34

0.377