Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AAHT64_RS17445 Genome accession   NZ_CP155054
Coordinates   3388702..3389343 (-) Length   213 a.a.
NCBI ID   WP_003234184.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain R38     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3383702..3394343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT64_RS17430 (AAHT64_17430) ydfK 3384248..3384895 (+) 648 WP_003234178.1 DUF554 domain-containing protein -
  AAHT64_RS17435 (AAHT64_17435) cesA 3385098..3386000 (+) 903 WP_003234180.1 carboxylesterase -
  AAHT64_RS17440 (AAHT64_17440) ydfJ 3386412..3388586 (-) 2175 WP_003243548.1 MMPL family transporter -
  AAHT64_RS17445 (AAHT64_17445) vraR 3388702..3389343 (-) 642 WP_003234184.1 two-component system response regulator YdfI Regulator
  AAHT64_RS17450 (AAHT64_17450) ydfH 3389336..3390559 (-) 1224 WP_015252722.1 two-component system sensor histidine kinase YdfH -
  AAHT64_RS17455 (AAHT64_17455) - 3390827..3390976 (+) 150 WP_003234189.1 hypothetical protein -
  AAHT64_RS17460 (AAHT64_17460) - 3390973..3391152 (+) 180 WP_010886421.1 hypothetical protein -
  AAHT64_RS17465 (AAHT64_17465) ydfG 3391238..3391681 (+) 444 WP_014478970.1 carboxymuconolactone decarboxylase family protein -
  AAHT64_RS17470 (AAHT64_17470) ydfF 3391761..3392441 (-) 681 WP_003244115.1 winged helix-turn-helix domain-containing protein -
  AAHT64_RS17475 (AAHT64_17475) ydfE 3392531..3393154 (+) 624 WP_029317354.1 flavin reductase family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23985.98 Da        Isoelectric Point: 5.4183

>NTDB_id=895585 AAHT64_RS17445 WP_003234184.1 3388702..3389343(-) (vraR) [Bacillus subtilis subsp. subtilis strain R38]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDIPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRNETQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=895585 AAHT64_RS17445 WP_003234184.1 3388702..3389343(-) (vraR) [Bacillus subtilis subsp. subtilis strain R38]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATATCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAGGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCGATCAGAGGAAATGTGCTGTTGCAGCCTGATATCCTTAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAATGAGACGCAGCTGACAGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGCGAACAGTAAAGTCCAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.493

99.061

0.362