Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   AAHT64_RS18145 Genome accession   NZ_CP155054
Coordinates   3504627..3505061 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis subsp. subtilis strain R38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3499627..3510061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT64_RS18130 (AAHT64_18130) epsK 3500256..3501107 (-) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -
  AAHT64_RS18135 (AAHT64_18135) - 3501088..3502176 (-) 1089 WP_003246551.1 lipoprotein -
  AAHT64_RS18140 (AAHT64_18140) topB 3502379..3504562 (-) 2184 WP_003246684.1 DNA topoisomerase III -
  AAHT64_RS18145 (AAHT64_18145) lrpC 3504627..3505061 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  AAHT64_RS18150 (AAHT64_18150) ydzA 3505246..3505536 (+) 291 WP_003246602.1 DUF3817 domain-containing protein -
  AAHT64_RS18155 (AAHT64_18155) amj 3505580..3506389 (-) 810 WP_003234394.1 lipid II flippase Amj -
  AAHT64_RS18160 (AAHT64_18160) ydaG 3506895..3507317 (-) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  AAHT64_RS18165 (AAHT64_18165) ydaF 3507395..3507946 (-) 552 WP_003246691.1 GNAT family protein -
  AAHT64_RS18170 (AAHT64_18170) lyxE 3508032..3508535 (-) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  AAHT64_RS18175 (AAHT64_18175) ydaD 3508551..3509411 (-) 861 WP_003246648.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=895586 AAHT64_RS18145 WP_003246585.1 3504627..3505061(-) (lrpC) [Bacillus subtilis subsp. subtilis strain R38]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=895586 AAHT64_RS18145 WP_003246585.1 3504627..3505061(-) (lrpC) [Bacillus subtilis subsp. subtilis strain R38]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1