Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   R4702_RS02725 Genome accession   NZ_CP137106
Coordinates   544767..545498 (-) Length   243 a.a.
NCBI ID   WP_000889922.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16P4028     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 539767..550498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4702_RS02695 blpC 540317..540472 (+) 156 WP_000358817.1 quorum-sensing system pheromone BlpC -
  R4702_RS02700 - 540514..541854 (-) 1341 WP_001017624.1 sensor histidine kinase -
  R4702_RS02705 comE/blpR 541868..542605 (-) 738 WP_001219145.1 response regulator transcription factor Regulator
  R4702_RS02710 - 542610..542948 (-) 339 WP_000682118.1 LytTR family DNA-binding domain-containing protein -
  R4702_RS02715 - 543224..543553 (+) 330 WP_000132572.1 hypothetical protein -
  R4702_RS02720 - 543721..544770 (-) 1050 WP_317810222.1 ABC transporter permease -
  R4702_RS02725 pptA 544767..545498 (-) 732 WP_000889922.1 ABC transporter ATP-binding protein Regulator
  R4702_RS02730 - 545566..545976 (+) 411 WP_001278304.1 HIT family protein -
  R4702_RS02735 - 545986..546273 (+) 288 WP_317810224.1 hypothetical protein -
  R4702_RS02740 dnaJ 546615..547751 (-) 1137 WP_317810226.1 molecular chaperone DnaJ -
  R4702_RS02745 - 547956..548309 (-) 354 WP_000115730.1 hypothetical protein -
  R4702_RS02750 dnaK 548322..550145 (-) 1824 WP_000034662.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26982.51 Da        Isoelectric Point: 4.8754

>NTDB_id=895539 R4702_RS02725 WP_000889922.1 544767..545498(-) (pptA) [Streptococcus pneumoniae strain 16P4028]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVAPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=895539 R4702_RS02725 WP_000889922.1 544767..545498(-) (pptA) [Streptococcus pneumoniae strain 16P4028]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGCTCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708