Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   R4699_RS06900 Genome accession   NZ_CP137105
Coordinates   1367713..1368444 (-) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16H2092     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1362713..1373444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4699_RS06870 blpC 1363261..1363416 (+) 156 WP_000358814.1 quorum-sensing system pheromone BlpC -
  R4699_RS06875 - 1363459..1364799 (-) 1341 WP_050104728.1 sensor histidine kinase -
  R4699_RS06880 comE/blpR 1364813..1365550 (-) 738 WP_001219124.1 response regulator transcription factor Regulator
  R4699_RS06885 - 1365555..1365893 (-) 339 WP_000682123.1 LytTR family DNA-binding domain-containing protein -
  R4699_RS06890 - 1366170..1366499 (+) 330 WP_000132572.1 hypothetical protein -
  R4699_RS06895 - 1366667..1367716 (-) 1050 WP_000653751.1 ABC transporter permease -
  R4699_RS06900 pptA 1367713..1368444 (-) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  R4699_RS06905 - 1368512..1368922 (+) 411 WP_001278304.1 HIT family protein -
  R4699_RS06910 - 1368932..1369219 (+) 288 WP_050104727.1 hypothetical protein -
  R4699_RS06915 - 1369381..1369620 (+) 240 WP_001813906.1 hypothetical protein -
  R4699_RS06920 dnaJ 1369942..1371078 (-) 1137 WP_001841444.1 molecular chaperone DnaJ -
  R4699_RS06925 - 1371283..1371558 (-) 276 WP_000386177.1 hypothetical protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=895489 R4699_RS06900 WP_000889923.1 1367713..1368444(-) (pptA) [Streptococcus pneumoniae strain 16H2092]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=895489 R4699_RS06900 WP_000889923.1 1367713..1368444(-) (pptA) [Streptococcus pneumoniae strain 16H2092]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAAAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708