Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   R4708_RS07635 Genome accession   NZ_CP137104
Coordinates   1472565..1473491 (+) Length   308 a.a.
NCBI ID   WP_000103702.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain LM     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1467565..1478491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4708_RS07625 amiA3 1469023..1471002 (+) 1980 WP_000742234.1 peptide ABC transporter substrate-binding protein Regulator
  R4708_RS07630 amiC 1471069..1472565 (+) 1497 WP_000759905.1 ABC transporter permease Regulator
  R4708_RS07635 amiD 1472565..1473491 (+) 927 WP_000103702.1 oligopeptide ABC transporter permease OppC Regulator
  R4708_RS07640 amiE 1473500..1474567 (+) 1068 WP_000159553.1 ABC transporter ATP-binding protein Regulator
  R4708_RS07645 amiF 1474578..1475504 (+) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  R4708_RS07650 - 1475579..1475764 (-) 186 Protein_1465 transposase -
  R4708_RS07655 - 1475957..1477303 (-) 1347 WP_001821303.1 IS1380-like element ISSpn5 family transposase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34620.73 Da        Isoelectric Point: 9.7939

>NTDB_id=895427 R4708_RS07635 WP_000103702.1 1472565..1473491(+) (amiD) [Streptococcus pneumoniae strain LM]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWKSVFKQFMKKKSTVVMLGILVAIILISFIYPMFSKFDFNDVSKVNDFSVR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINVVIGVFVGGIWGISKSVDRVMMEVYNVISNIPPLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=895427 R4708_RS07635 WP_000103702.1 1472565..1473491(+) (amiD) [Streptococcus pneumoniae strain LM]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAACTATTGATGCGCCAGCATA
TTCTTACTGGAAATCAGTGTTTAAACAATTTATGAAGAAAAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCCATCA
TTTTGATAAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAGGTAAACGACTTTAGTGTTCGT
TATATCAAGCCAAATGCGGAGCATTGGTTCGGTACTGACAGTAACGGTAAATCGCTCTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCCATCCTCATTTCTGTGATTGCGACAGTGATTAACGTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGTA
TTTCAAAATCAGTTGACCGTGTCATGATGGAAGTTTACAACGTCATCTCAAACATCCCACCTCTTTTGATTGTTATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCCATGAGCGTAACAACATGGATTGGTATTGCCTTCAT
GATCCGTGTGCAAATCTTGCGCTATCGTGACTTGGAATACAACTTGGCGTCACGTACTTTGGGAACACCAACCTTGAAGA
TTGTTGCCAAAAATATCATGCCTCAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCTTTCTTCGGTCTTGGATTACCGATTACAGTGCCAAGTTTGGGTCGTTTGATTTCGGATTATTC
ACAAAACGTAACAACCAATGCTTACTTGTTCTGGATTCCATTGACAACCCTTGTCTTGGTATCCTTGTCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(123-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.442

100

0.834
  amiD Streptococcus thermophilus LMG 18311

81.494

100

0.815
  amiD Streptococcus thermophilus LMD-9

81.494

100

0.815