Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   R4709_RS08860 Genome accession   NZ_CP137102
Coordinates   1696539..1697771 (+) Length   410 a.a.
NCBI ID   WP_001863391.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16H3071-2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1691539..1702771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4709_RS08830 - 1691611..1692288 (+) 678 WP_000221611.1 DnaD domain-containing protein -
  R4709_RS08835 tpiA 1692386..1693144 (+) 759 WP_000087897.1 triose-phosphate isomerase -
  R4709_RS08840 lytC 1693182..1694687 (+) 1506 WP_075575672.1 choline binding-anchored murein hydrolase LytC -
  R4709_RS08845 - 1695183..1695701 (+) 519 WP_000229874.1 DNA starvation/stationary phase protection protein -
  R4709_RS08850 - 1695831..1696337 (+) 507 WP_050091052.1 dihydrofolate reductase -
  R4709_RS08855 - 1696337..1696507 (+) 171 WP_000442275.1 hypothetical protein -
  R4709_RS08860 clpX 1696539..1697771 (+) 1233 WP_001863391.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  R4709_RS08865 yihA 1697780..1698367 (+) 588 WP_000422599.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  R4709_RS08870 - 1698378..1698758 (+) 381 WP_001140412.1 RidA family protein -
  R4709_RS08875 rapZ 1698810..1699700 (+) 891 WP_000163033.1 RNase adapter RapZ -
  R4709_RS08880 - 1699697..1700674 (+) 978 WP_001231086.1 YvcK family protein -
  R4709_RS08885 whiA 1700671..1701582 (+) 912 WP_000011276.1 DNA-binding protein WhiA -
  R4709_RS08890 - 1701616..1702584 (-) 969 WP_000081003.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45740.31 Da        Isoelectric Point: 4.4775

>NTDB_id=895290 R4709_RS08860 WP_001863391.1 1696539..1697771(+) (clpX) [Streptococcus pneumoniae strain 16H3071-2]
MSTNRKNDMMVYCSFCGKNQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQVADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDANSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKETVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=895290 R4709_RS08860 WP_001863391.1 1696539..1697771(+) (clpX) [Streptococcus pneumoniae strain 16H3071-2]
ATGTCTACAAATAGAAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAACCAAGAAGAAGTACAAAAAATAAT
TGCTGGCAACAATGCTTTTATTTGTAATGAATGCGTGGAGTTAGCTCAGGAAATCATTCGAGAAGAATTGGTTGAGGAAG
TCTTGGCAGACTTGTCTGAGGTGCCAAAACCAATTGAACTCCTCCATATCTTGAACCACTATGTAATTGGTCAAGATCGT
GCCAAGCGTGCCTTGGCAGTGGCGGTTTATAACCACTACAAACGCATCAATTTCCACGATACACGCGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATTTTGATGATTGGCCCAACTGGTTCAGGGAAAACTTTCCTTGCCCAGACCTTGGCTA
AGAGCTTGAATGTACCTTTTGCTATTGCGGATGCGACAGCTCTGACGGAGGCTGGTTATGTGGGTGAGGACGTGGAAAAT
ATCCTCCTCAAACTCTTGCAGGTTGCTGACTTTAACATCGAACGTGCAGAGCGTGGCATTATCTATGTGGATGAAATTGA
CAAGATTGCCAAGAAGAGTGAGAATGTGTCTATCACACGTGATGTTTCTGGTGAAGGGGTGCAACAAGCCCTTCTCAAGA
TTATCGAGGGAACTGTTGCTAGCGTACCGCCTCAAGGTGGACGCAAACATCCACAACAAGAGATGATTCAAGTGGATACA
AAAAATATCCTCTTCATCGTGGGTGGTGCTTTTGATGGTATTGAAGAAATTGTCAAACAACGTCTGGGTGAAAAAGTCAT
CGGATTTGGTCAAAACAATAAGGCGATTGACGCAAACAGCTCATACATGCAAGAAATCATCGCTGAAGACATTCAAAAAT
TTGGTATTATCCCTGAGTTGATTGGACGCTTGCCTGTTTTTGCGGCTCTTGAGCAATTGACCGTTGATGACTTGGTTCGC
ATCTTGAAAGAGCCAAGAAATGCCTTGGTGAAACAATACCAAACCTTGCTTTCTTATGATGATGTTGAGTTAGAATTTGA
CGACGAAGCCCTTCAAGAGATTGCTAATAAAGCAATTGAACGGAAGACAGGGGCGCGTGGACTTCGCTCCATCATCGAAG
AAACCATGCTAGATGTTATGTTTGAGGTGCCGAGTCAGGAAAATGTGAAATTGGTTCGCATCACTAAAGAAACTGTCGAT
GGAACGGATAAACCGATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.585

100

0.866
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.965

98.049

0.559