Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   R4709_RS07445 Genome accession   NZ_CP137102
Coordinates   1425906..1426832 (+) Length   308 a.a.
NCBI ID   WP_000103700.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16H3071-2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1420906..1431832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4709_RS07435 amiA3 1422364..1424343 (+) 1980 WP_000742233.1 peptide ABC transporter substrate-binding protein Regulator
  R4709_RS07440 amiC 1424410..1425906 (+) 1497 WP_000759907.1 ABC transporter permease Regulator
  R4709_RS07445 amiD 1425906..1426832 (+) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  R4709_RS07450 amiE 1426841..1427908 (+) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  R4709_RS07455 amiF 1427919..1428845 (+) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  R4709_RS07460 - 1429464..1430273 (+) 810 Protein_1424 ABC transporter substrate-binding protein -
  R4709_RS07465 - 1430285..1431162 (+) 878 Protein_1425 ABC transporter permease -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34634.76 Da        Isoelectric Point: 9.7939

>NTDB_id=895280 R4709_RS07445 WP_000103700.1 1425906..1426832(+) (amiD) [Streptococcus pneumoniae strain 16H3071-2]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWKSVFKQFMKKKSTVVMLGILVAIILISFIYPMFSKFDFNDVSKVNDFSVR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPPLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=895280 R4709_RS07445 WP_000103700.1 1425906..1426832(+) (amiD) [Streptococcus pneumoniae strain 16H3071-2]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAACTATTGATGCGCCAGCATA
TTCTTACTGGAAATCAGTGTTTAAACAATTTATGAAGAAAAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCCATCA
TTTTGATAAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAGGTAAACGACTTTAGTGTTCGT
TATATCAAGCCAAATGCGGAGCATTGGTTCGGTACTGACAGTAACGGTAAATCGCTCTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCCATCCTCATTTCTGTGATTGCGACAGTGATTAACTTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGTA
TTTCAAAATCAGTTGACCGTGTCATGATGGAAGTTTACAACGTCATCTCAAACATCCCACCTCTTTTGATTGTTATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCCATGAGCGTAACAACATGGATTGGTATTGCCTTCAT
GATCCGTGTGCAAATCTTGCGCTATCGTGACTTGGAATACAACTTGGCGTCACGTACTTTGGGAACACCAACCTTGAAGA
TTGTTGCCAAAAATATCATGCCTCAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCTTTCTTCGGTCTTGGATTACCGATTACAGTGCCAAGTTTGGGTCGTTTGATTTCGGATTATTC
ACAAAACGTAACAACCAATGCTTACTTGTTCTGGATTCCATTGACAACCCTTGTCTTGGTATCCTTGTCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.117

100

0.831
  amiD Streptococcus thermophilus LMG 18311

81.169

100

0.812
  amiD Streptococcus thermophilus LMD-9

81.169

100

0.812