Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   AAVB50_RS09765 Genome accession   NZ_CP154923
Coordinates   1802965..1805295 (+) Length   776 a.a.
NCBI ID   WP_345806062.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2233     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1797965..1810295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB50_RS09725 (AAVB50_09720) yhbY 1798215..1798505 (+) 291 WP_003226133.1 ribosome assembly RNA-binding protein YhbY -
  AAVB50_RS09730 (AAVB50_09725) nadD 1798517..1799086 (+) 570 WP_004398676.1 nicotinate-nucleotide adenylyltransferase -
  AAVB50_RS09735 (AAVB50_09730) yqeK 1799076..1799636 (+) 561 WP_029317884.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  AAVB50_RS09740 (AAVB50_09735) rsfS 1799654..1800004 (+) 351 WP_345806061.1 ribosome silencing factor -
  AAVB50_RS09745 (AAVB50_09740) yqeM 1800001..1800744 (+) 744 WP_106073582.1 class I SAM-dependent methyltransferase -
  AAVB50_RS09750 (AAVB50_09745) comER 1800810..1801631 (-) 822 WP_004398597.1 late competence protein ComER -
  AAVB50_RS09755 (AAVB50_09750) comEA 1801715..1802332 (+) 618 WP_004398514.1 competence protein ComEA Machinery gene
  AAVB50_RS09760 (AAVB50_09755) comEB 1802399..1802968 (+) 570 WP_015714288.1 ComE operon protein 2 -
  AAVB50_RS09765 (AAVB50_09760) comEC 1802965..1805295 (+) 2331 WP_345806062.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AAVB50_RS09770 (AAVB50_09765) yqzM 1805335..1805469 (-) 135 WP_003229983.1 YqzM family protein -
  AAVB50_RS09775 (AAVB50_09770) - 1805510..1805659 (+) 150 WP_003229985.1 hypothetical protein -
  AAVB50_RS09780 (AAVB50_09775) holA 1805699..1806742 (+) 1044 WP_345806063.1 DNA polymerase III subunit delta -
  AAVB50_RS09785 (AAVB50_09780) rpsT 1806757..1807023 (-) 267 WP_003229989.1 30S ribosomal protein S20 -
  AAVB50_RS09790 (AAVB50_09785) gpr 1807227..1808333 (+) 1107 WP_014480309.1 GPR endopeptidase -
  AAVB50_RS09795 (AAVB50_09790) spoIIP 1808396..1809601 (+) 1206 WP_014477383.1 spore autolysin SpoIIP -
  AAVB50_RS09800 (AAVB50_09795) yqxA 1809618..1809956 (+) 339 WP_024572265.1 YqxA family protein -

Sequence

Protein


Download         Length: 776 a.a.        Molecular weight: 86625.24 Da        Isoelectric Point: 7.0493

>NTDB_id=895258 AAVB50_RS09765 WP_345806062.1 1802965..1805295(+) (comEC) [Bacillus subtilis strain FUA2233]
MMNSRLLLPMAAASATAGITAAAYFPAIFLFILFLLIILIKTRHAFLIIVCFFSFILFFVLYAVTDSQNVSSYRQGTYQF
KAVIDTIPKIDGDRMSMVVKTPDKEKWAAAYRILSAGEKEQLLYIEPGMSCELTGTLEEPNHATVPGAFDYNEYLYRQHI
HWNYSVTSIQNCSDPENFKYKVLSLRKHIISFTNSLLPPDSAGIVQALTVGDRFYVEDEVLTAYQKLGVVHLLAISGLHV
GILTAGLFYIMIRLGITREKASILLLLFLPLYVMLTGAAPSVLRAALMAGVYLAGSLVKWRVHSATAICLSYIVLLLFNP
YHLFEAGFQLSFAVSFSLILSSSIFQQVKTSLGQLTIVSLIAQLGSLPILLYHFHQFSIISVPMNMLMVPFYTFCILPGA
VAGVLLLSLSASFGRLFFSWFDLLISWTNRLITNIADVDVFTIMIAHPAPVLLFLFTVAIILLLMAIEKRSLSQLMITGG
ICCTVMFLLFIYPCLSSEGEVDMIDIGQGDSMFVGAPHQRGRVLIDTGGTLSYSSEPWREKQHPFSLGEKVLIPFLTAKG
IKQLDALILTHADQDHIGEAETLLKHHKVKRLVIPKGFVSEPKDEKVLQTAREEGVTIEEVKRGDVLQIKDLQFHVLSPE
TPDPASKNNSSLVLWMETGVLSWILTGDLEKEGEQEVMDVFPNIKADVLKVGHHGSKGSTGEEFIQQLQPKTAIISAGKN
NRYHHPHQEVLQLLQRHSIRVLRTDQNGTIQYRYKNRVGTFSVYPPYDTSDITETN

Nucleotide


Download         Length: 2331 bp        

>NTDB_id=895258 AAVB50_RS09765 WP_345806062.1 1802965..1805295(+) (comEC) [Bacillus subtilis strain FUA2233]
GTGATGAATTCGCGTTTGTTATTGCCTATGGCGGCAGCTTCGGCAACGGCTGGAATTACTGCCGCCGCTTATTTCCCCGC
TATTTTTCTTTTCATCCTCTTTCTCCTCATCATTTTAATCAAAACGAGGCACGCTTTTCTTATTATTGTTTGTTTCTTCT
CTTTTATATTGTTTTTTGTACTGTATGCAGTCACAGATTCTCAGAATGTCTCTTCCTATCGGCAGGGAACCTATCAATTC
AAGGCAGTGATTGACACTATTCCCAAAATTGACGGCGACCGTATGTCTATGGTGGTTAAGACACCTGATAAGGAAAAATG
GGCTGCTGCGTATCGCATTCTGTCTGCTGGTGAAAAAGAACAGCTGTTATACATAGAACCAGGAATGTCATGTGAGTTGA
CTGGTACATTGGAAGAACCGAATCACGCAACTGTGCCGGGAGCATTTGATTATAACGAGTATCTTTATCGGCAGCATATT
CATTGGAACTACTCTGTCACGTCTATTCAAAACTGCAGCGACCCTGAAAATTTTAAGTACAAGGTGCTCAGCTTGAGAAA
ACATATCATATCATTCACAAACAGCCTTTTGCCTCCTGATTCGGCAGGGATTGTACAGGCACTTACAGTTGGTGACAGAT
TTTATGTGGAGGACGAAGTGCTTACCGCGTATCAAAAGCTTGGTGTTGTCCATCTTTTGGCAATATCAGGACTCCACGTG
GGGATTTTGACAGCAGGTTTGTTTTATATCATGATTCGCCTTGGTATAACTAGAGAAAAGGCGTCAATTCTGTTGCTGTT
ATTTCTGCCGCTCTATGTGATGTTGACCGGCGCTGCTCCTTCAGTGCTACGCGCCGCTCTCATGGCGGGTGTTTACTTAG
CTGGAAGCCTTGTCAAATGGCGTGTCCACTCTGCAACTGCAATTTGCCTTTCATACATCGTCCTTCTGCTCTTCAATCCT
TATCATCTCTTTGAAGCCGGTTTTCAGCTATCGTTCGCCGTCAGTTTTTCTTTAATTCTATCCTCTTCTATTTTTCAGCA
GGTTAAAACCTCCTTGGGACAGCTGACAATTGTATCACTCATCGCTCAGCTGGGCTCGCTTCCGATTCTTCTATATCATT
TTCATCAGTTTTCTATCATCAGCGTACCGATGAATATGTTGATGGTACCATTTTATACCTTCTGTATTTTGCCGGGAGCT
GTAGCAGGTGTTCTTCTATTAAGTCTTTCCGCTTCGTTTGGGAGATTGTTTTTCAGTTGGTTTGATTTATTGATAAGCTG
GACCAATAGGCTAATCACAAACATTGCAGATGTTGATGTGTTCACGATTATGATCGCCCATCCTGCACCTGTTTTGCTTT
TTTTATTCACGGTTGCGATCATCCTATTGCTTATGGCGATTGAAAAACGCTCCTTGTCGCAGTTGATGATAACCGGCGGC
ATTTGCTGCACGGTGATGTTTCTGCTCTTTATATATCCGTGTCTTAGTTCCGAAGGAGAAGTGGATATGATAGATATTGG
ACAGGGTGACAGCATGTTTGTAGGTGCTCCGCATCAGCGGGGTCGTGTCTTAATTGATACCGGCGGCACTTTGTCTTACT
CGTCAGAGCCTTGGCGCGAAAAACAGCATCCGTTTTCACTGGGGGAAAAGGTGCTGATTCCGTTTTTAACTGCTAAGGGA
ATCAAGCAGCTTGACGCTTTAATTCTGACGCACGCTGACCAAGATCATATCGGAGAGGCGGAGACTCTGCTGAAGCATCA
TAAAGTAAAGCGCCTCGTGATTCCGAAAGGGTTCGTTTCTGAACCTAAAGATGAGAAAGTGCTGCAGACAGCCAGAGAAG
AGGGAGTGACAATTGAAGAGGTGAAGCGAGGCGATGTATTGCAAATAAAGGATTTGCAGTTCCATGTACTGTCACCTGAA
ACACCTGATCCGGCAAGCAAAAATAATTCCTCTCTCGTTCTGTGGATGGAGACGGGCGTTCTGAGCTGGATTTTGACGGG
TGATCTGGAGAAAGAAGGGGAACAGGAGGTGATGGACGTGTTTCCAAATATTAAAGCAGATGTCTTAAAGGTGGGGCACC
ATGGGAGCAAAGGCTCTACCGGTGAAGAATTCATCCAACAGCTTCAGCCGAAAACGGCCATTATCTCAGCCGGGAAAAAC
AATCGGTACCATCATCCTCATCAAGAAGTTCTGCAACTATTACAGAGACATTCTATCCGCGTGCTGCGAACAGATCAAAA
CGGAACGATCCAATATAGATACAAAAACAGAGTTGGAACCTTTTCTGTCTATCCTCCATATGATACATCAGATATAACAG
AGACGAACTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(507-718)

Domain of unknown function (DUF4131) (DUF4131)

(20-170)

Competence protein (Competence)

(208-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Bacillus subtilis subsp. subtilis str. 168

97.552

100

0.976