Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   AAVB50_RS08070 Genome accession   NZ_CP154923
Coordinates   1508497..1510269 (+) Length   590 a.a.
NCBI ID   WP_038828019.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2233     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1503497..1515269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB50_RS08050 (AAVB50_08045) etfB 1504232..1505005 (+) 774 WP_014480500.1 electron transfer flavoprotein subunit beta -
  AAVB50_RS08055 (AAVB50_08050) etfA 1505041..1506018 (+) 978 WP_004398999.1 electron transfer flavoprotein subunit alpha -
  AAVB50_RS08060 (AAVB50_08055) abfB 1506237..1507724 (+) 1488 WP_088327483.1 alpha-L-arabinofuranosidase AbfB -
  AAVB50_RS08065 (AAVB50_08060) trxA 1508047..1508361 (+) 315 WP_003222500.1 thioredoxin -
  AAVB50_RS08070 (AAVB50_08065) uvrC 1508497..1510269 (+) 1773 WP_038828019.1 excinuclease ABC subunit UvrC Machinery gene
  AAVB50_RS08075 (AAVB50_08070) - 1510639..1511865 (+) 1227 WP_024572581.1 aspartate kinase -
  AAVB50_RS08080 (AAVB50_08075) yslB 1511909..1512355 (-) 447 WP_003222508.1 YslB family protein -
  AAVB50_RS08085 (AAVB50_08080) sdhC 1512648..1513256 (+) 609 WP_003222512.1 succinate dehydrogenase cytochrome B558 -
  AAVB50_RS08090 (AAVB50_08085) sdhA 1513290..1515050 (+) 1761 WP_003229567.1 succinate dehydrogenase flavoprotein subunit -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 68500.32 Da        Isoelectric Point: 9.4732

>NTDB_id=895243 AAVB50_RS08070 WP_038828019.1 1508497..1510269(+) (uvrC) [Bacillus subtilis strain FUA2233]
MNKQLKEKLALLPDQPGCYLMKDRQQTVIYVGKAKVLKNRVRSYFTGSHDAKTQRLVTEIEDFEYIVTSSNLEALILEMN
LIKKHDPKYNVMLKDDKTYPFIKLTHERHPRLIVTRNVKKDKGRYFGPYPNVQAARETKKLLDRLYPLRKCSKLPDRVCL
YYHLGQCLAPCVKDISEETNRELVESITRFLRGGYNEVKKELEEKMHEAAENLEFERAKELRDQIAHIESTMEKQKMTMN
DLVDRDVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPLYQEADEEFLTFIGQFYSKNNHFLPKEILVPDSVDQSMIEQL
LETNVHQPKKGPKKELLMLAHKNAKIALKEKFSLIERDEERSIGAVQKLGEALNIYTPHRIEAFDNSNIQGTNPVSAMIV
FIDGKPYKKEYRKYKIKTVTGPDDYGSMREVVRRRYTRVLRENLPLPDLIIIDGGKGQINAARDVIENELGLDIPIAGLA
KDEKHRTSNLLIGEPLEVVYLERNSQEFYLLQRIQDEVHRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKMLLKHFGSV
KKMKEASLEDIKKAGVPAAAAQLLYDKLQK

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=895243 AAVB50_RS08070 WP_038828019.1 1508497..1510269(+) (uvrC) [Bacillus subtilis strain FUA2233]
ATGAACAAACAACTGAAAGAAAAACTCGCCCTCCTTCCTGATCAACCGGGTTGTTATCTCATGAAGGACCGGCAGCAGAC
TGTGATCTACGTAGGGAAAGCGAAAGTGCTGAAAAACAGAGTGCGCTCCTACTTCACCGGTTCTCACGACGCGAAAACCC
AAAGGCTTGTGACGGAAATCGAGGATTTTGAATATATCGTGACGTCCTCCAATCTTGAAGCGCTTATTTTAGAAATGAAT
CTGATCAAAAAGCATGATCCGAAATACAACGTCATGCTCAAAGACGACAAAACCTATCCTTTCATAAAACTCACCCATGA
ACGCCACCCAAGGCTGATTGTCACCCGCAATGTCAAAAAAGACAAAGGGCGCTATTTCGGGCCGTATCCGAATGTACAGG
CAGCAAGGGAAACAAAAAAACTGCTCGACCGTCTGTATCCTCTCAGAAAATGCTCCAAGCTCCCGGACAGAGTGTGCCTT
TACTATCATCTGGGCCAATGCCTCGCTCCGTGTGTAAAGGATATTTCCGAAGAGACGAACAGAGAGCTGGTTGAAAGCAT
TACACGTTTCTTAAGGGGCGGCTATAATGAGGTCAAAAAAGAGCTTGAAGAGAAAATGCATGAAGCTGCTGAGAATCTTG
AGTTTGAACGAGCAAAAGAGCTTCGTGACCAAATTGCCCATATTGAATCAACGATGGAAAAACAAAAAATGACGATGAAC
GATCTAGTCGACCGTGATGTATTCGCGTACGCGTACGATAAGGGCTGGATGTGCGTGCAGGTTTTTTTCATCCGCCAAGG
AAAGCTCATTGAACGCGATGTCAGCATGTTCCCGCTTTATCAGGAAGCAGATGAAGAGTTCCTCACGTTCATCGGGCAGT
TCTATTCAAAAAACAACCACTTCCTTCCGAAGGAGATTTTAGTTCCAGACAGCGTAGATCAATCCATGATCGAGCAGCTG
CTGGAAACAAACGTTCACCAGCCGAAGAAAGGCCCGAAAAAAGAACTGCTCATGCTTGCCCATAAAAATGCGAAAATCGC
ATTGAAAGAAAAATTCTCTTTAATCGAACGCGACGAGGAGCGTTCAATCGGGGCTGTGCAGAAACTAGGTGAGGCATTAA
ATATTTATACGCCGCACAGAATTGAAGCGTTTGATAACTCAAACATACAGGGGACAAACCCGGTTTCCGCGATGATTGTG
TTTATCGACGGCAAACCATACAAAAAGGAATACCGCAAATATAAAATCAAAACCGTTACAGGGCCGGATGATTACGGTTC
TATGAGAGAAGTTGTCAGAAGACGCTATACGAGAGTGCTTCGTGAGAATCTGCCGCTGCCCGATCTGATTATCATTGACG
GAGGAAAAGGGCAGATCAACGCAGCAAGGGATGTCATTGAAAATGAACTCGGCTTGGATATTCCGATCGCCGGTTTAGCG
AAAGATGAAAAACACAGAACCTCAAATTTACTGATCGGTGAGCCGCTGGAGGTGGTGTATCTGGAACGAAACAGCCAGGA
ATTTTACCTCCTGCAGCGCATTCAGGACGAGGTGCACCGTTTTGCAATCAGTTTTCACAGGCAAATCCGGGGAAAAAGCG
CGTTTCAATCCGTTTTGGACGACATCCCGGGTATCGGAGAGAAAAGAAAGAAAATGCTGTTAAAGCATTTCGGTTCCGTT
AAAAAAATGAAGGAAGCAAGCCTTGAGGACATCAAAAAAGCCGGTGTTCCCGCAGCGGCGGCTCAGCTCCTTTACGACAA
ATTGCAAAAATAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(373-523)

GIY-YIG catalytic domain (GIY-YIG)

(16-90)

UvrB/uvrC motif (UVR)

(197-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

59.184

99.661

0.59
  uvrC Streptococcus pneumoniae R6

58.844

99.661

0.586
  uvrC Streptococcus pneumoniae D39

58.844

99.661

0.586