Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   R4709_RS02765 Genome accession   NZ_CP137102
Coordinates   547860..548591 (-) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16H3071-2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 542860..553591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4709_RS02735 blpC 543407..543562 (+) 156 WP_000358811.1 quorum-sensing system pheromone BlpC -
  R4709_RS02740 - 543606..544946 (-) 1341 WP_001099893.1 sensor histidine kinase -
  R4709_RS02745 comE/blpR 544960..545697 (-) 738 WP_001219137.1 LytTR family DNA-binding domain-containing protein Regulator
  R4709_RS02750 - 545702..546040 (-) 339 WP_317803430.1 LytTR family DNA-binding domain-containing protein -
  R4709_RS02755 - 546317..546646 (+) 330 WP_000132572.1 hypothetical protein -
  R4709_RS02760 - 546814..547863 (-) 1050 WP_000653751.1 ABC transporter permease -
  R4709_RS02765 pptA 547860..548591 (-) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  R4709_RS02770 - 548659..549069 (+) 411 WP_001278304.1 HIT family protein -
  R4709_RS02775 - 549079..549366 (+) 288 WP_000777753.1 hypothetical protein -
  R4709_RS02780 - 549528..549722 (+) 195 WP_001808905.1 hypothetical protein -
  R4709_RS02785 dnaJ 550044..551180 (-) 1137 WP_001836079.1 molecular chaperone DnaJ -
  R4709_RS02790 - 551385..551738 (-) 354 WP_000115730.1 hypothetical protein -
  R4709_RS02795 dnaK 551751..553574 (-) 1824 WP_044792889.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=895235 R4709_RS02765 WP_000889923.1 547860..548591(-) (pptA) [Streptococcus pneumoniae strain 16H3071-2]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=895235 R4709_RS02765 WP_000889923.1 547860..548591(-) (pptA) [Streptococcus pneumoniae strain 16H3071-2]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAAAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708