Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AAVB50_RS04995 Genome accession   NZ_CP154923
Coordinates   949528..950163 (+) Length   211 a.a.
NCBI ID   WP_123373831.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2233     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 944528..955163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB50_RS04970 (AAVB50_04970) liaI 945655..946035 (+) 381 WP_014480835.1 cell envelope stress-induced membrane anchor protein LiaI -
  AAVB50_RS04975 (AAVB50_04975) liaH 946062..946739 (+) 678 WP_015714684.1 PspA/IM30 family protein -
  AAVB50_RS04980 (AAVB50_04980) liaG 946840..947712 (+) 873 WP_345805892.1 DUF4097 domain-containing protein -
  AAVB50_RS04985 (AAVB50_04985) liaF 947746..948471 (+) 726 WP_014480832.1 LiaRS two-component regulatory system accessory protein LiaF -
  AAVB50_RS04990 (AAVB50_04990) liaS 948468..949550 (+) 1083 WP_015251253.1 two-component system sensor histidine kinase LiaS -
  AAVB50_RS04995 (AAVB50_04995) vraR 949528..950163 (+) 636 WP_123373831.1 two-component system response regulator LiaR Regulator
  AAVB50_RS05000 (AAVB50_05000) gerAC 950171..951292 (-) 1122 WP_345805893.1 spore germination receptor protein GerAC -
  AAVB50_RS05005 (AAVB50_05005) gerAB 951289..952386 (-) 1098 WP_029318427.1 spore germination receptor protein GerAB -
  AAVB50_RS05010 (AAVB50_05010) gerAA 952355..953803 (-) 1449 WP_049139666.1 spore germination receptor protein GerAA -
  AAVB50_RS05015 (AAVB50_05015) yvzF 953922..954107 (+) 186 WP_003221676.1 YvzF family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23138.83 Da        Isoelectric Point: 5.0313

>NTDB_id=895231 AAVB50_RS04995 WP_123373831.1 949528..950163(+) (vraR) [Bacillus subtilis strain FUA2233]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAVELSPDVILMDLVMEGMDGIEATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=895231 AAVB50_RS04995 WP_123373831.1 949528..950163(+) (vraR) [Bacillus subtilis strain FUA2233]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTTGCTGTGGAACTGTCGCCTGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTGAAGCTACAAAGCAAATTTGCCGGGAGCTTTCCGACCCGAAAATTATTGTG
CTCACTAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTGGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGCTGCGCCACTCAGGTGAAAACGCGCTCCCGCATGAATCGCTTACGAAACGGGAGCTCGAAATACTCTGCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACCAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTATACGCACATCGAAACCATCTCGTAAAATAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.857

99.526

0.526
  degU Bacillus subtilis subsp. subtilis str. 168

38.393

100

0.408