Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   R4710_RS08360 Genome accession   NZ_CP137101
Coordinates   1586122..1586853 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16P2012-2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1581122..1591853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4710_RS08335 dnaK 1581261..1583084 (+) 1824 WP_000034673.1 molecular chaperone DnaK -
  R4710_RS08340 - 1583086..1583442 (+) 357 WP_000114433.1 hypothetical protein -
  R4710_RS08345 dnaJ 1583844..1584980 (+) 1137 WP_001066296.1 molecular chaperone DnaJ -
  R4710_RS08350 - 1585347..1585634 (-) 288 WP_000777760.1 hypothetical protein -
  R4710_RS08355 - 1585644..1586054 (-) 411 WP_050245350.1 HIT family protein -
  R4710_RS08360 pptA 1586122..1586853 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  R4710_RS08365 - 1586850..1587899 (+) 1050 WP_050245349.1 ABC transporter permease -
  R4710_RS08370 - 1588067..1588396 (-) 330 WP_000132583.1 hypothetical protein -
  R4710_RS08375 - 1588673..1589011 (+) 339 WP_000682124.1 LytTR family DNA-binding domain-containing protein -
  R4710_RS08380 comE/blpR 1589016..1589753 (+) 738 WP_001219139.1 response regulator transcription factor Regulator
  R4710_RS08385 - 1589767..1591107 (+) 1341 WP_317804516.1 sensor histidine kinase -
  R4710_RS08390 blpC 1591151..1591306 (-) 156 WP_000358811.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=895206 R4710_RS08360 WP_000889923.1 1586122..1586853(+) (pptA) [Streptococcus pneumoniae strain 16P2012-2]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=895206 R4710_RS08360 WP_000889923.1 1586122..1586853(+) (pptA) [Streptococcus pneumoniae strain 16P2012-2]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708