Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/comEC   Type   Machinery gene
Locus tag   LDO10_RS10585 Genome accession   NZ_AP024929
Coordinates   1942053..1944086 (+) Length   677 a.a.
NCBI ID   WP_143586889.1    Uniprot ID   -
Organism   Thermus thermophilus strain AA2-2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1937053..1949086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO10_RS10550 (TthAA22_20660) - 1937830..1938294 (+) 465 WP_143586880.1 hypothetical protein -
  LDO10_RS10555 (TthAA22_20670) pfkA 1938271..1939239 (-) 969 WP_143586882.1 6-phosphofructokinase -
  LDO10_RS10560 (TthAA22_20680) rsmI 1939236..1940030 (-) 795 WP_143586885.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LDO10_RS10565 (TthAA22_20690) - 1940032..1940526 (-) 495 WP_014630403.1 hypothetical protein -
  LDO10_RS10570 (TthAA22_20700) - 1940589..1941116 (-) 528 WP_011173971.1 inorganic diphosphatase -
  LDO10_RS10575 (TthAA22_20710) - 1941149..1941775 (+) 627 WP_011173972.1 YcxB family protein -
  LDO10_RS10580 (TthAA22_20720) comEA 1941748..1942056 (+) 309 WP_024119555.1 helix-hairpin-helix domain-containing protein Machinery gene
  LDO10_RS10585 (TthAA22_20730) comA/comEC 1942053..1944086 (+) 2034 WP_143586889.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LDO10_RS10590 (TthAA22_20740) - 1944074..1944883 (-) 810 WP_143586891.1 ParB/RepB/Spo0J family partition protein -
  LDO10_RS10595 (TthAA22_20750) soj 1944867..1945616 (-) 750 WP_011173976.1 chromosome-partitioning ATPase Soj -
  LDO10_RS10600 (TthAA22_20760) rsmG 1945610..1946359 (-) 750 WP_223971179.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -

Sequence

Protein


Download         Length: 677 a.a.        Molecular weight: 71833.97 Da        Isoelectric Point: 10.3358

>NTDB_id=89518 LDO10_RS10585 WP_143586889.1 1942053..1944086(+) (comA/comEC) [Thermus thermophilus strain AA2-2]
MRPSWTWGVGLGMGALVAAWGLFAPWAFLGLGLLPFLRLPFALGFGLVLARALLFPLPEPPWGAAVEGVFAVRGGFTRAE
GHLLWVSHYPPLPDGRYRLRGRIAPPQGRTNPGGFDQRAWLQSQGAKGVLRAESAEPLGPLPDWREGFRGRLGVGLSLEA
REVVEGLVLGDKGGLEAAYPLFQRAGLAHLLALSGLHVGVLVGFAVLGLYPLGRWRYLLALALLPFYLLLAGPSPSLVRA
SLMAGLSLLGLFLGLGGAGVVQALGLALFLQLLLRPEALLGLGFQLSYLAVLGLALVLPALRLPPGPRGYLLGGVAASLA
VQAFLLPLLLHRFGFAPLLAPLANLLALPLVALLVPLGFLKLFLGALPASLVEPLARGLLLLAGLAAQGPLLRWGEIAPV
GFALYYLGLLPLLFALHRRLPWRRALLLASLPALVGLLAARPKPLDLWMLDVGQGDALLARMGGGEVLVDGGRAEKGEAV
VRALRALGVEALELLVATHPDADHYGGLFRVIEEVPVGLALLAPGFPEDHPLAEALRARGVPAVRAGAGTRLKVGRGEVR
VLWPEALSGDDNQDGLALLLDFGRGRALLLADLPREVEARLPVGEVEALKVSHHGSQSGTSEVLLERTRPRVALIGVGPN
PFGHPHPEVLERLKRHGAEVRRTDQDGAVRVLFGYAW

Nucleotide


Download         Length: 2034 bp        

>NTDB_id=89518 LDO10_RS10585 WP_143586889.1 1942053..1944086(+) (comA/comEC) [Thermus thermophilus strain AA2-2]
ATGAGGCCTTCTTGGACCTGGGGAGTGGGGCTTGGGATGGGGGCTTTGGTGGCCGCCTGGGGGCTTTTCGCGCCTTGGGC
CTTCCTTGGGCTCGGCCTCCTTCCCTTCCTCCGCCTTCCCTTCGCCCTGGGCTTCGGCCTCGTCCTGGCCCGGGCCCTCC
TCTTCCCCTTGCCCGAGCCCCCGTGGGGCGCCGCCGTGGAGGGGGTCTTCGCCGTGAGGGGCGGGTTCACGCGGGCGGAG
GGCCACCTCCTCTGGGTGAGCCACTATCCCCCTCTACCGGACGGCCGCTACCGCCTCCGGGGGCGCATCGCCCCGCCCCA
AGGCCGGACCAACCCCGGGGGGTTTGACCAACGGGCCTGGCTCCAGAGCCAGGGGGCCAAGGGGGTGCTCCGGGCCGAAA
GCGCCGAGCCCTTGGGGCCCCTGCCCGACTGGAGGGAGGGGTTCCGGGGGCGCCTAGGGGTGGGCCTGAGCCTCGAGGCC
CGGGAGGTGGTGGAGGGCCTGGTCCTCGGGGACAAGGGGGGCTTAGAGGCGGCCTACCCCCTCTTCCAGCGGGCGGGCCT
CGCCCACCTCCTGGCGCTTTCCGGCCTTCACGTGGGGGTGCTCGTGGGCTTCGCCGTCCTCGGCCTCTACCCCCTGGGGC
GGTGGCGCTACCTCCTGGCCCTCGCCCTCCTCCCCTTCTACCTCCTCCTCGCCGGGCCGAGCCCCTCCCTGGTGCGGGCG
AGCCTCATGGCGGGCCTTTCCCTCCTCGGCCTCTTCCTGGGCCTTGGGGGGGCCGGGGTGGTCCAGGCCCTGGGGCTCGC
CCTCTTCCTCCAGCTCCTCCTCCGCCCCGAGGCCCTCCTCGGCCTCGGGTTCCAGCTCTCCTACCTCGCGGTGCTGGGCC
TGGCCCTGGTCCTCCCGGCCCTGAGGCTTCCCCCGGGCCCCAGGGGCTACCTCCTCGGGGGCGTGGCCGCAAGCCTGGCC
GTCCAGGCCTTCCTCCTCCCCCTCCTCCTCCACCGCTTCGGCTTCGCCCCCCTCCTCGCCCCCCTCGCCAACCTCCTCGC
CCTCCCCCTGGTGGCCCTCCTCGTGCCCCTCGGCTTCCTCAAGCTCTTCCTCGGCGCCCTCCCCGCCTCCCTGGTGGAGC
CCCTCGCCCGGGGGCTCCTCCTCCTGGCAGGGCTTGCGGCCCAAGGGCCCCTCCTCCGCTGGGGGGAGATCGCCCCCGTG
GGCTTTGCCCTCTACTACCTGGGCCTTCTCCCCCTCCTTTTCGCCCTCCACCGCAGGCTTCCCTGGCGGCGCGCCCTCCT
CCTCGCCTCCCTGCCCGCCCTGGTGGGCCTCCTCGCCGCCCGGCCCAAGCCCCTGGACCTCTGGATGCTGGACGTGGGCC
AGGGGGACGCCCTCCTCGCCCGCATGGGGGGCGGGGAGGTCCTGGTGGACGGGGGACGGGCGGAGAAGGGGGAGGCGGTG
GTCCGGGCCCTCCGCGCCCTCGGGGTGGAGGCCCTGGAGCTTTTGGTGGCCACCCACCCCGACGCGGACCACTACGGGGG
GCTTTTCCGGGTGATAGAGGAGGTTCCCGTGGGCCTTGCCCTCCTCGCCCCTGGTTTCCCCGAGGACCACCCCCTGGCCG
AAGCCCTAAGGGCGCGGGGCGTCCCCGCGGTGCGGGCCGGGGCGGGAACCCGCCTTAAGGTGGGCCGGGGCGAGGTCCGG
GTGCTCTGGCCCGAGGCCCTCTCCGGGGACGACAACCAAGACGGCCTCGCCCTCCTCCTGGACTTCGGCCGGGGACGGGC
CCTCCTCCTCGCCGACCTGCCCCGGGAGGTGGAGGCCAGGCTTCCCGTGGGGGAGGTGGAGGCGCTCAAGGTGAGCCACC
ATGGCTCCCAAAGCGGCACCTCCGAGGTCCTCCTGGAAAGGACGAGGCCCCGGGTGGCCCTCATCGGGGTGGGGCCCAAC
CCCTTCGGCCACCCCCACCCCGAGGTCCTGGAGCGCCTTAAGCGCCACGGCGCGGAGGTGCGCCGCACCGACCAGGACGG
GGCGGTGCGCGTCCTCTTCGGCTACGCCTGGTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(451-634)

Competence protein (Competence)

(167-418)

Domain of unknown function (DUF4131) (DUF4131)

(93-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Thermus thermophilus HB27

97.932

100

0.979
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.359

90.399

0.365

Multiple sequence alignment