Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LDO10_RS10580 Genome accession   NZ_AP024929
Coordinates   1941748..1942056 (+) Length   102 a.a.
NCBI ID   WP_024119555.1    Uniprot ID   -
Organism   Thermus thermophilus strain AA2-2     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1936748..1947056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO10_RS10550 (TthAA22_20660) - 1937830..1938294 (+) 465 WP_143586880.1 hypothetical protein -
  LDO10_RS10555 (TthAA22_20670) pfkA 1938271..1939239 (-) 969 WP_143586882.1 6-phosphofructokinase -
  LDO10_RS10560 (TthAA22_20680) rsmI 1939236..1940030 (-) 795 WP_143586885.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LDO10_RS10565 (TthAA22_20690) - 1940032..1940526 (-) 495 WP_014630403.1 hypothetical protein -
  LDO10_RS10570 (TthAA22_20700) - 1940589..1941116 (-) 528 WP_011173971.1 inorganic diphosphatase -
  LDO10_RS10575 (TthAA22_20710) - 1941149..1941775 (+) 627 WP_011173972.1 YcxB family protein -
  LDO10_RS10580 (TthAA22_20720) comEA 1941748..1942056 (+) 309 WP_024119555.1 helix-hairpin-helix domain-containing protein Machinery gene
  LDO10_RS10585 (TthAA22_20730) comA/comEC 1942053..1944086 (+) 2034 WP_143586889.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LDO10_RS10590 (TthAA22_20740) - 1944074..1944883 (-) 810 WP_143586891.1 ParB/RepB/Spo0J family partition protein -
  LDO10_RS10595 (TthAA22_20750) soj 1944867..1945616 (-) 750 WP_011173976.1 chromosome-partitioning ATPase Soj -
  LDO10_RS10600 (TthAA22_20760) rsmG 1945610..1946359 (-) 750 WP_223971179.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 10947.23 Da        Isoelectric Point: 10.3435

>NTDB_id=89517 LDO10_RS10580 WP_024119555.1 1941748..1942056(+) (comEA) [Thermus thermophilus strain AA2-2]
MVLGYLLAVALLGLLALWPKLAPAPLPVRVEALGKVAPLPQAQTPVSLNEASLEELMALPGIGPVLARRIVEGRPYARVE
DLLKVKGIGPATLERLRPYLRP

Nucleotide


Download         Length: 309 bp        

>NTDB_id=89517 LDO10_RS10580 WP_024119555.1 1941748..1942056(+) (comEA) [Thermus thermophilus strain AA2-2]
CTGGTCCTCGGCTACCTCCTCGCGGTAGCCCTCCTCGGCCTCCTCGCCCTCTGGCCCAAGCTCGCCCCCGCCCCGCTTCC
GGTGCGGGTGGAGGCCCTGGGAAAGGTCGCCCCTTTGCCCCAGGCGCAAACCCCCGTGAGCCTGAACGAGGCGAGCCTGG
AAGAGCTCATGGCCCTGCCCGGCATCGGCCCCGTCCTAGCCCGGCGCATCGTGGAGGGCAGGCCCTACGCCCGGGTGGAG
GACCTTCTCAAGGTGAAAGGGATCGGCCCCGCCACCCTGGAGCGCCTCCGCCCCTACCTCCGGCCATGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Thermus thermophilus HB27

100

100

1
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.815

100

0.422

Multiple sequence alignment