Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   AAVB74_RS15740 Genome accession   NZ_CP154920
Coordinates   2976865..2977890 (-) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain FUA2232     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2971865..2982890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB74_RS15705 (AAVB74_15705) - 2972350..2973246 (-) 897 WP_003232206.1 2-dehydropantoate 2-reductase -
  AAVB74_RS15710 (AAVB74_15710) ylbP 2973406..2973888 (+) 483 WP_014476736.1 N-acetyltransferase -
  AAVB74_RS15715 (AAVB74_15715) gerR 2973945..2974526 (-) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  AAVB74_RS15720 (AAVB74_15720) rpmF 2974672..2974851 (-) 180 WP_003154457.1 50S ribosomal protein L32 -
  AAVB74_RS15725 (AAVB74_15725) ylbN 2974873..2975391 (-) 519 WP_014479718.1 DUF177 domain-containing protein -
  AAVB74_RS15730 (AAVB74_15730) - 2975419..2975604 (+) 186 WP_003232215.1 hypothetical protein -
  AAVB74_RS15735 (AAVB74_15735) ylbM 2975601..2976848 (+) 1248 WP_174223259.1 nucleotidyltransferase -
  AAVB74_RS15740 (AAVB74_15740) sepM 2976865..2977890 (-) 1026 WP_003245451.1 protease DdcP Regulator
  AAVB74_RS15745 (AAVB74_15745) ylbK 2977892..2978674 (-) 783 WP_345806375.1 patatin family protein -
  AAVB74_RS15750 (AAVB74_15750) spoVV 2978855..2980081 (+) 1227 WP_345806376.1 dipicolinic acid transporter SpoVV -
  AAVB74_RS15755 (AAVB74_15755) coaD 2980092..2980577 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  AAVB74_RS15760 (AAVB74_15760) rsmD 2980582..2981136 (-) 555 WP_029317761.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AAVB74_RS15765 (AAVB74_15765) ylbG 2981459..2981731 (-) 273 WP_015715839.1 YlbG family protein -
  AAVB74_RS15770 (AAVB74_15770) ylbF 2981786..2982235 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  AAVB74_RS15775 (AAVB74_15775) ylbE 2982351..2982590 (-) 240 WP_003232231.1 YlbE-like family protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=895147 AAVB74_RS15740 WP_003245451.1 2976865..2977890(-) (sepM) [Bacillus subtilis strain FUA2232]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=895147 AAVB74_RS15740 WP_003245451.1 2976865..2977890(-) (sepM) [Bacillus subtilis strain FUA2232]
TTGCTACGAAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCATTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
CGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402