Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   AAVB74_RS15770 Genome accession   NZ_CP154920
Coordinates   2981786..2982235 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain FUA2232     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2976786..2987235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB74_RS15740 (AAVB74_15740) sepM 2976865..2977890 (-) 1026 WP_003245451.1 protease DdcP Regulator
  AAVB74_RS15745 (AAVB74_15745) ylbK 2977892..2978674 (-) 783 WP_345806375.1 patatin family protein -
  AAVB74_RS15750 (AAVB74_15750) spoVV 2978855..2980081 (+) 1227 WP_345806376.1 dipicolinic acid transporter SpoVV -
  AAVB74_RS15755 (AAVB74_15755) coaD 2980092..2980577 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  AAVB74_RS15760 (AAVB74_15760) rsmD 2980582..2981136 (-) 555 WP_029317761.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AAVB74_RS15765 (AAVB74_15765) ylbG 2981459..2981731 (-) 273 WP_015715839.1 YlbG family protein -
  AAVB74_RS15770 (AAVB74_15770) ylbF 2981786..2982235 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  AAVB74_RS15775 (AAVB74_15775) ylbE 2982351..2982590 (-) 240 WP_003232231.1 YlbE-like family protein -
  AAVB74_RS15780 (AAVB74_15780) ylbD 2982606..2983004 (-) 399 WP_003232233.1 YlbD family protein -
  AAVB74_RS15785 (AAVB74_15785) ylbC 2983234..2984274 (-) 1041 WP_041850862.1 CAP domain-containing protein -
  AAVB74_RS15790 (AAVB74_15790) ylbB 2984358..2984804 (-) 447 WP_003221362.1 CBS domain-containing protein -
  AAVB74_RS15795 (AAVB74_15795) ylbA 2984944..2985306 (+) 363 WP_003232238.1 YugN family protein -
  AAVB74_RS15800 (AAVB74_15800) ctaG 2985338..2986231 (-) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  AAVB74_RS15805 (AAVB74_15805) ctaF 2986259..2986591 (-) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  AAVB74_RS15810 (AAVB74_15810) ctaE 2986594..2987217 (-) 624 WP_015715836.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=895148 AAVB74_RS15770 WP_003221370.1 2981786..2982235(-) (ylbF) [Bacillus subtilis strain FUA2232]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=895148 AAVB74_RS15770 WP_003221370.1 2981786..2982235(-) (ylbF) [Bacillus subtilis strain FUA2232]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1