Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   R4703_RS08565 Genome accession   NZ_CP137100
Coordinates   1583884..1584615 (+) Length   243 a.a.
NCBI ID   WP_000889919.1    Uniprot ID   A0A062WNF5
Organism   Streptococcus pneumoniae strain LYP     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1578884..1589615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4703_RS08540 dnaK 1579068..1580891 (+) 1824 WP_000034662.1 molecular chaperone DnaK -
  R4703_RS08545 - 1580893..1581249 (+) 357 WP_000114422.1 hypothetical protein -
  R4703_RS08550 dnaJ 1581651..1582787 (+) 1137 WP_001066301.1 molecular chaperone DnaJ -
  R4703_RS08555 - 1583109..1583396 (-) 288 WP_000777760.1 hypothetical protein -
  R4703_RS08560 - 1583406..1583816 (-) 411 WP_001278301.1 HIT family protein -
  R4703_RS08565 pptA 1583884..1584615 (+) 732 WP_000889919.1 ABC transporter ATP-binding protein Regulator
  R4703_RS08570 - 1584612..1585661 (+) 1050 WP_000653766.1 ABC transporter permease -
  R4703_RS08575 - 1585829..1586158 (-) 330 WP_000132572.1 hypothetical protein -
  R4703_RS08580 - 1586434..1586772 (+) 339 WP_000876676.1 LytTR family DNA-binding domain-containing protein -
  R4703_RS08585 comE/blpR 1586777..1587514 (+) 738 WP_001219147.1 response regulator transcription factor Regulator
  R4703_RS08590 - 1587528..1588868 (+) 1341 WP_001028044.1 sensor histidine kinase -
  R4703_RS08595 blpC 1588910..1589065 (-) 156 WP_000358817.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27012.49 Da        Isoelectric Point: 4.7737

>NTDB_id=895129 R4703_RS08565 WP_000889919.1 1583884..1584615(+) (pptA) [Streptococcus pneumoniae strain LYP]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=895129 R4703_RS08565 WP_000889919.1 1583884..1584615(+) (pptA) [Streptococcus pneumoniae strain LYP]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAGATGTTCCGTCTGGACCAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTAGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WNF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.614

99.177

0.72
  pptA Streptococcus thermophilus LMD-9

71.784

99.177

0.712