Detailed information NTG0089512

Bioinformatically predicted

Overview

• Name: pilQ
• Type: Machinery gene
• Locus tag: LDO10_RS07500
• Genome accession: NZ_AP024929
• Coordinates: 1403731..1406004 (+)
• Length: 757 a.a.
• NCBI ID: WP_223970988.1
• Uniprot ID: -
• Organism: Thermus thermophilus strain AA2-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1398731..1411004

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDO10_RS07470 (TthAA22_14640)	-	1398842..1399333 (+)	492	WP_143586973.1	DUF5317 domain-containing protein	-
LDO10_RS07475 (TthAA22_14650)	-	1399388..1400392 (+)	1005	WP_143586066.1	homoisocitrate dehydrogenase	-
LDO10_RS07480 (TthAA22_14660)	pilM	1400527..1401660 (+)	1134	WP_143586068.1	type IV pilus assembly protein PilM	Machinery gene
LDO10_RS07485 (TthAA22_14670)	pilN	1401653..1402276 (+)	624	WP_011228637.1	competence protein	Machinery gene
LDO10_RS07490 (TthAA22_14680)	pilO	1402266..1402847 (+)	582	WP_143586070.1	type 4a pilus biogenesis protein PilO	Machinery gene
LDO10_RS07495 (TthAA22_14690)	pilW	1402844..1403734 (+)	891	WP_143586072.1	competence protein	Machinery gene
LDO10_RS07500 (TthAA22_14700)	pilQ	1403731..1406004 (+)	2274	WP_223970988.1	secretin N-terminal domain-containing protein	Machinery gene
LDO10_RS07505 (TthAA22_14710)	aroC	1406063..1407214 (+)	1152	WP_143586076.1	chorismate synthase	-
LDO10_RS07510 (TthAA22_14720)	-	1407239..1407793 (+)	555	WP_143586078.1	shikimate kinase	-
LDO10_RS07515 (TthAA22_14730)	-	1407771..1408817 (+)	1047	WP_143586080.1	3-dehydroquinate synthase family protein	-
LDO10_RS07520 (TthAA22_14740)	rsmF	1408863..1410233 (-)	1371	WP_223970991.1	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	-
LDO10_RS07525 (TthAA22_14750)	acpS	1410286..1410663 (+)	378	WP_143586084.1	holo-ACP synthase	-
LDO10_RS07530 (TthAA22_14760)	-	1410641..1410994 (-)	354	WP_143586086.1	DUF4870 domain-containing protein	-

Sequence

Protein

• Length: 757 a.a.
• Molecular weight: 82765.75 Da
• Isoelectric Point: 5.0770

>NTDB_id=89512 LDO10_RS07500 WP_223970988.1 1403731..1406004(+) (pilQ) [Thermus thermophilus strain AA2-2]
MKSAWIRAAVIALAGLGAFGLAGSFPEEPRFQAPVNLKVSESQVEAGQTLPLDVVLEALARSVGLQPLIYRAYDTSGDPA
KAQPPLPNIKLDFQGKPFREVWDLLFATYGNQYGLDYLFLPPDVVVVAPTQVITALVDAPSRTGAMERRPYIVGIPEIAY
KRTETDAQGQTRNVVNIEGAKAWVQNDLLPFLSREAAGLNVNWIVVEEGGRLKAVLSVLATPEQHARFSDILQRAGIDFR
PLPALAQPKPRVEKTYTLTYATFPDLLAFLQSRLPEAQISVVPTNPQRAIVLATEEDHARLSELLKTADVPKTVRRVYAL
QNLTFREAQERLKPLLEKDLKGARLESLPGNPKALLLEAPEAEHALFAEILKALDVPPQAPEAPQEATLRRLYPLRYANA
EQVAPFLAREVPGIVVQTVPGQPVLSVRGTEAQLREVESLLAQIDRPPEQGPPVFQRAYQLSNAKAVELAQVLQEALKAR
QAQNQGQQNQALPTREATVVADPRTNTLIVTGTQEDLALVEGLIPKLDQPVPQVSLRVRIQEVQSNLTRSLGLKWNSIAG
GNVAASILDSGLSLIFDSTRSLAALNIMATLDALQQQGLSRALRDVNQTVLNNQTARLQSGETFFIRRVVEGNVERVPFD
IGLIVEVTPQITADGQILLNIRAEVSGNVQRNPVDGDVDRFTKQVVTTTLRVKDGETVVLGGLTSQESNQSQQGVPLLMD
IPLIGELFKQRTNESTDKELLVVITADILKETASANP

Nucleotide

• Length: 2274 bp

>NTDB_id=89512 LDO10_RS07500 WP_223970988.1 1403731..1406004(+) (pilQ) [Thermus thermophilus strain AA2-2]
ATGAAGAGCGCGTGGATCCGTGCGGCCGTGATCGCCCTCGCAGGGCTAGGGGCTTTTGGCCTTGCGGGGAGCTTTCCCGA
GGAGCCCCGCTTCCAGGCCCCGGTGAACCTCAAGGTCTCGGAATCCCAGGTCGAAGCGGGCCAGACCCTGCCTCTGGACG
TGGTCCTCGAGGCCCTGGCGCGAAGCGTGGGGCTCCAGCCCCTCATCTACCGGGCCTACGATACAAGCGGGGACCCCGCC
AAGGCCCAGCCCCCCCTGCCCAACATCAAGCTGGACTTCCAGGGCAAGCCCTTCCGGGAGGTCTGGGACCTCCTCTTCGC
CACCTACGGCAACCAGTACGGCCTGGACTACCTCTTCCTGCCCCCCGACGTGGTGGTGGTGGCCCCCACCCAGGTGATCA
CCGCCCTGGTGGACGCCCCGAGCCGCACGGGGGCCATGGAGCGCAGGCCCTACATCGTGGGCATCCCCGAGATCGCCTAC
AAGCGCACGGAGACGGATGCCCAGGGCCAGACCCGCAACGTGGTCAACATTGAGGGCGCCAAGGCCTGGGTCCAGAACGA
CCTCCTCCCCTTCCTCTCCCGGGAGGCCGCGGGGCTCAACGTGAACTGGATCGTGGTGGAGGAGGGCGGGAGGCTCAAGG
CCGTCCTCTCCGTTCTCGCCACCCCCGAGCAACACGCCCGCTTCTCCGACATCCTGCAGCGGGCCGGGATTGACTTCCGC
CCCCTCCCCGCCCTGGCCCAGCCCAAGCCCCGGGTGGAGAAGACCTACACCCTCACCTACGCCACCTTCCCCGACCTCCT
CGCCTTCCTCCAGTCCCGCCTCCCCGAGGCCCAGATCAGCGTGGTCCCCACCAACCCCCAAAGGGCCATCGTCCTCGCCA
CCGAGGAGGACCACGCCCGCTTGAGCGAGCTTCTGAAGACGGCCGACGTCCCCAAGACCGTCCGCCGGGTCTACGCCCTG
CAGAACCTCACCTTCAGGGAGGCCCAGGAGCGCCTAAAGCCCCTCCTGGAGAAGGACCTCAAGGGGGCCCGCCTGGAGAG
CCTCCCCGGCAACCCCAAGGCCCTCCTCCTCGAGGCCCCCGAGGCGGAGCACGCCCTCTTCGCCGAGATCCTGAAGGCCC
TGGACGTCCCCCCCCAGGCCCCCGAAGCCCCCCAGGAGGCCACCTTGCGGCGCCTCTACCCCCTGCGCTACGCCAACGCC
GAGCAGGTGGCCCCCTTCCTCGCCCGGGAGGTGCCGGGGATCGTGGTCCAGACCGTCCCCGGCCAACCCGTCCTCTCGGT
GCGGGGCACGGAAGCGCAGCTTAGGGAGGTGGAAAGCCTCCTCGCCCAGATTGACCGCCCCCCGGAGCAGGGCCCTCCCG
TGTTCCAGCGGGCCTACCAGCTCTCCAACGCCAAGGCGGTGGAGCTCGCCCAGGTGCTCCAGGAGGCGCTCAAGGCCCGG
CAGGCCCAGAACCAGGGCCAGCAGAACCAGGCCCTCCCCACCCGGGAGGCCACGGTGGTGGCCGACCCCAGGACCAACAC
CCTCATCGTCACCGGCACCCAGGAGGACCTCGCCCTGGTGGAGGGCCTCATCCCCAAGCTGGACCAGCCTGTGCCCCAGG
TTTCCTTGCGGGTGCGCATCCAGGAGGTCCAGTCCAACCTGACCCGTAGCCTCGGCCTCAAGTGGAACAGCATCGCCGGC
GGCAACGTGGCGGCCAGCATCCTGGACTCGGGCCTTTCCCTCATCTTTGACTCCACGCGAAGCCTCGCCGCCCTCAACAT
CATGGCCACCCTGGACGCCCTGCAGCAACAGGGCCTCTCCCGGGCCCTCCGGGACGTGAACCAGACCGTCCTCAACAACC
AGACCGCCCGCCTGCAGTCCGGCGAGACCTTCTTCATCCGGCGGGTGGTGGAGGGGAACGTGGAGCGGGTGCCCTTTGAC
ATCGGCCTCATCGTGGAGGTCACGCCCCAGATCACCGCCGACGGCCAGATCCTCCTCAACATCAGGGCCGAGGTCTCGGG
GAACGTCCAGCGCAACCCCGTGGACGGGGACGTGGACCGCTTCACCAAGCAGGTGGTGACCACCACCCTAAGGGTCAAAG
ACGGGGAGACCGTGGTCCTCGGGGGCCTCACCTCCCAGGAGTCCAACCAGAGCCAGCAGGGGGTGCCCCTCCTCATGGAC
ATCCCCCTGATCGGCGAGCTCTTCAAGCAGCGGACGAACGAGAGCACCGACAAGGAGCTTCTGGTGGTGATCACCGCCGA
CATCCTCAAGGAGACGGCCTCGGCGAACCCCTAA

Domains

Predicted by InterproScan.

• Bacterial type II/III secretion system short domain (Secretin_N) (457-533)

• Bacterial type II/III secretion system short domain (Secretin_N) (391-450)

• Bacterial type II and III secretion system protein (Secretin) (593-750)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilQ	Thermus thermophilus HB27	96.962	100	0.97