Detailed information
Bioinformatically predicted
Overview
| Name | pilM | Type | Machinery gene |
| Locus tag | LDO10_RS07480 | Genome accession | NZ_AP024929 |
| Coordinates | 1400527..1401660 (+) | Length | 377 a.a. |
| NCBI ID | WP_143586068.1 | Uniprot ID | - |
| Organism | Thermus thermophilus strain AA2-2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1395527..1406660
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDO10_RS07445 (TthAA22_14610) | - | 1395530..1396288 (+) | 759 | WP_143586058.1 | type III pantothenate kinase | - |
| LDO10_RS07450 (TthAA22_14620) | - | 1396251..1396616 (-) | 366 | WP_172619229.1 | hypothetical protein | - |
| LDO10_RS07465 (TthAA22_14630) | - | 1397385..1398791 (+) | 1407 | WP_143586064.1 | HD domain-containing phosphohydrolase | - |
| LDO10_RS07470 (TthAA22_14640) | - | 1398842..1399333 (+) | 492 | WP_143586973.1 | DUF5317 domain-containing protein | - |
| LDO10_RS07475 (TthAA22_14650) | - | 1399388..1400392 (+) | 1005 | WP_143586066.1 | homoisocitrate dehydrogenase | - |
| LDO10_RS07480 (TthAA22_14660) | pilM | 1400527..1401660 (+) | 1134 | WP_143586068.1 | type IV pilus assembly protein PilM | Machinery gene |
| LDO10_RS07485 (TthAA22_14670) | pilN | 1401653..1402276 (+) | 624 | WP_011228637.1 | competence protein | Machinery gene |
| LDO10_RS07490 (TthAA22_14680) | pilO | 1402266..1402847 (+) | 582 | WP_143586070.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| LDO10_RS07495 (TthAA22_14690) | pilW | 1402844..1403734 (+) | 891 | WP_143586072.1 | competence protein | Machinery gene |
| LDO10_RS07500 (TthAA22_14700) | pilQ | 1403731..1406004 (+) | 2274 | WP_223970988.1 | secretin N-terminal domain-containing protein | Machinery gene |
Sequence
Protein
Download Length: 377 a.a. Molecular weight: 41334.90 Da Isoelectric Point: 4.3805
>NTDB_id=89508 LDO10_RS07480 WP_143586068.1 1400527..1401660(+) (pilM) [Thermus thermophilus strain AA2-2]
MFKSLSQLFRPRVEALGLEIGASALKLVEVSGNPPALKALASRPTPPGLLVEGMVAEPAALAQEIKELLLEARTRKRYVV
TALSNLAVILRPIQVPKMPLKEMEEAVRWEAERYIPFPIDEVVLDFAPLTPLSEVQEGEQVQVMVAAARQEAVAGVLEAL
RGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLAVRVLTLSGKDFTEAIARSFNLDLLA
AEEVKRTYGMATIPTEDEELLLDFDAERERYSPGRIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLR
GLASLLTDTLGVNFEPVNPWEAVAVDPKRFESEQLQEIGPEFAVALGLALRGVEPLD
MFKSLSQLFRPRVEALGLEIGASALKLVEVSGNPPALKALASRPTPPGLLVEGMVAEPAALAQEIKELLLEARTRKRYVV
TALSNLAVILRPIQVPKMPLKEMEEAVRWEAERYIPFPIDEVVLDFAPLTPLSEVQEGEQVQVMVAAARQEAVAGVLEAL
RGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLAVRVLTLSGKDFTEAIARSFNLDLLA
AEEVKRTYGMATIPTEDEELLLDFDAERERYSPGRIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLR
GLASLLTDTLGVNFEPVNPWEAVAVDPKRFESEQLQEIGPEFAVALGLALRGVEPLD
Nucleotide
Download Length: 1134 bp
>NTDB_id=89508 LDO10_RS07480 WP_143586068.1 1400527..1401660(+) (pilM) [Thermus thermophilus strain AA2-2]
GTGTTCAAAAGCCTTAGCCAGCTCTTCCGACCCAGGGTTGAGGCCCTGGGGTTGGAGATCGGGGCCTCCGCCCTGAAGCT
CGTGGAGGTGTCCGGGAACCCCCCTGCCCTCAAGGCCCTGGCCTCCCGCCCCACCCCGCCCGGCCTCCTGGTGGAAGGGA
TGGTGGCCGAGCCTGCCGCGTTGGCCCAGGAGATCAAGGAGCTTCTCCTCGAGGCCCGCACCCGCAAGCGCTACGTGGTC
ACCGCCCTCTCCAACCTGGCGGTGATCCTCCGCCCCATCCAGGTCCCCAAGATGCCCCTCAAGGAGATGGAGGAGGCGGT
GCGCTGGGAGGCGGAGCGCTACATTCCCTTCCCCATTGACGAGGTGGTCCTGGACTTCGCCCCCCTGACCCCCCTCTCCG
AGGTGCAGGAGGGGGAGCAGGTCCAGGTGATGGTGGCGGCGGCGCGGCAGGAGGCGGTGGCGGGGGTCCTCGAGGCCCTG
AGGGGGGCGGGGCTCGTCCCCGTGGTGCTGGACGTGAAGCCCTTCGCCGGGCTTTACCCTCTGGAGGCCAGGCTTGCGGA
GGAGCCCGACCGGGTCTTCCTCGTCCTGGACATCGGGGCCGAGAGCACGAGCCTCGTCCTGCTCCGGGGGGACAAGCCCC
TGGCGGTGCGCGTCCTCACCCTCTCGGGCAAGGACTTCACCGAGGCCATCGCCCGAAGCTTCAACCTGGACCTCCTCGCC
GCCGAGGAGGTGAAGCGGACCTACGGGATGGCCACCATCCCCACCGAGGACGAGGAACTCCTCCTGGACTTTGACGCCGA
GCGGGAGCGCTACAGCCCGGGGCGCATCTACGACGCCATCCGCCCGGTGCTGGTGGAACTCACCCAGGAGCTCCGCCGTA
GCCTGGAGTTCTTCCGCATCCAGCTGGAGGAGGCCTCGCCCGAGGTGGGCTACCTCCTGGGCGGGGGGAGCAAGCTCAGG
GGGCTCGCCTCCCTCCTCACCGACACCCTGGGGGTGAACTTTGAGCCCGTCAACCCCTGGGAGGCGGTGGCGGTGGACCC
CAAGCGCTTTGAGTCGGAGCAACTCCAGGAGATCGGGCCGGAGTTCGCCGTGGCCCTGGGCTTGGCGTTGAGGGGGGTGG
AGCCCCTTGATTAG
GTGTTCAAAAGCCTTAGCCAGCTCTTCCGACCCAGGGTTGAGGCCCTGGGGTTGGAGATCGGGGCCTCCGCCCTGAAGCT
CGTGGAGGTGTCCGGGAACCCCCCTGCCCTCAAGGCCCTGGCCTCCCGCCCCACCCCGCCCGGCCTCCTGGTGGAAGGGA
TGGTGGCCGAGCCTGCCGCGTTGGCCCAGGAGATCAAGGAGCTTCTCCTCGAGGCCCGCACCCGCAAGCGCTACGTGGTC
ACCGCCCTCTCCAACCTGGCGGTGATCCTCCGCCCCATCCAGGTCCCCAAGATGCCCCTCAAGGAGATGGAGGAGGCGGT
GCGCTGGGAGGCGGAGCGCTACATTCCCTTCCCCATTGACGAGGTGGTCCTGGACTTCGCCCCCCTGACCCCCCTCTCCG
AGGTGCAGGAGGGGGAGCAGGTCCAGGTGATGGTGGCGGCGGCGCGGCAGGAGGCGGTGGCGGGGGTCCTCGAGGCCCTG
AGGGGGGCGGGGCTCGTCCCCGTGGTGCTGGACGTGAAGCCCTTCGCCGGGCTTTACCCTCTGGAGGCCAGGCTTGCGGA
GGAGCCCGACCGGGTCTTCCTCGTCCTGGACATCGGGGCCGAGAGCACGAGCCTCGTCCTGCTCCGGGGGGACAAGCCCC
TGGCGGTGCGCGTCCTCACCCTCTCGGGCAAGGACTTCACCGAGGCCATCGCCCGAAGCTTCAACCTGGACCTCCTCGCC
GCCGAGGAGGTGAAGCGGACCTACGGGATGGCCACCATCCCCACCGAGGACGAGGAACTCCTCCTGGACTTTGACGCCGA
GCGGGAGCGCTACAGCCCGGGGCGCATCTACGACGCCATCCGCCCGGTGCTGGTGGAACTCACCCAGGAGCTCCGCCGTA
GCCTGGAGTTCTTCCGCATCCAGCTGGAGGAGGCCTCGCCCGAGGTGGGCTACCTCCTGGGCGGGGGGAGCAAGCTCAGG
GGGCTCGCCTCCCTCCTCACCGACACCCTGGGGGTGAACTTTGAGCCCGTCAACCCCTGGGAGGCGGTGGCGGTGGACCC
CAAGCGCTTTGAGTCGGAGCAACTCCAGGAGATCGGGCCGGAGTTCGCCGTGGCCCTGGGCTTGGCGTTGAGGGGGGTGG
AGCCCCTTGATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilM | Thermus thermophilus HB27 |
99.204 |
100 |
0.992 |