Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Machinery gene
Locus tag   LDO10_RS06665 Genome accession   NZ_AP024929
Coordinates   1235727..1237403 (+) Length   558 a.a.
NCBI ID   WP_223970923.1    Uniprot ID   -
Organism   Thermus thermophilus strain AA2-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1230727..1242403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO10_RS06640 (TthAA22_13010) - 1231591..1232571 (-) 981 WP_223970907.1 YpdA family putative bacillithiol disulfide reductase -
  LDO10_RS06645 (TthAA22_13020) pilA/pilA1 1232737..1233207 (+) 471 WP_223970911.1 GspH/FimT family protein Machinery gene
  LDO10_RS06650 (TthAA22_13030) pilA/pilA2 1233262..1233822 (+) 561 WP_267461438.1 type II secretion system protein Machinery gene
  LDO10_RS06655 (TthAA22_13040) pilA/pilA3 1233819..1234460 (+) 642 WP_223970918.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LDO10_RS06660 (TthAA22_13050) - 1234428..1235528 (-) 1101 WP_223970920.1 transposase -
  LDO10_RS06665 (TthAA22_13070) comZ 1235727..1237403 (+) 1677 WP_223970923.1 pilus assembly PilX N-terminal domain-containing protein Machinery gene
  LDO10_RS13460 - 1237621..1237731 (+) 111 Protein_1295 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  LDO10_RS06675 (TthAA22_13090) - 1238414..1238794 (+) 381 WP_223968480.1 DUF1640 domain-containing protein -
  LDO10_RS06680 (TthAA22_13100) - 1238870..1239412 (+) 543 WP_223968482.1 Uma2 family endonuclease -
  LDO10_RS06685 (TthAA22_13110) - 1239435..1239734 (+) 300 WP_008631315.1 nucleotidyltransferase -
  LDO10_RS06690 (TthAA22_13120) - 1239721..1240083 (+) 363 WP_060384345.1 HepT-like ribonuclease domain-containing protein -
  LDO10_RS06695 (TthAA22_13130) - 1240117..1240674 (-) 558 WP_223970927.1 Uma2 family endonuclease -
  LDO10_RS06700 (TthAA22_13140) - 1240693..1241349 (-) 657 WP_124104343.1 chromosome segregation protein ScpA -
  LDO10_RS06705 (TthAA22_13150) trpS 1241346..1242359 (-) 1014 WP_143585847.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 558 a.a.        Molecular weight: 59983.51 Da        Isoelectric Point: 5.9797

>NTDB_id=89507 LDO10_RS06665 WP_223970923.1 1235727..1237403(+) (comZ) [Thermus thermophilus strain AA2-2]
MNRKGIALVATLALMVVIALLVFGTFFTTQIELWTTRNDTTSVQAFYAAEAGLQKYKAALFQQYVWREQQGGTGGGSGCF
TSLARGLDLDRDGTLTPFVNNRLVLAQDEVVTDANGNPVGRYTVTLYKDAEDGQLFTLVSEGTSGGAKARVQATFRISNS
DYLEQAIFAGAGQANRWLNGGATIRGGVYVVGSPNDPDQYVIEANGNFALYNWYDLTTYSEVTNRVEPSYRQVQDLCASL
RVQYGKISVGGSTQIGEPNNKVKGVFVGRGAQDITGENVGVCQNNKGVCTEAMGGFDLSDPPPFPTLDAKLDSEACKGYS
TWRACLQGKAALRIQRIGNVLSVASPSDATLPSPCLQAMESGTLTLDTQSVDCTFTHLDGSRGGFRYTYTGDKKSGQGLL
EVFGDVVLEGIDVVLNRPVDYRAQSGSTKSATLAVLKLNGNGGNLDINGNLLPDATFGLFPNHALGFLAEGDIYQRGQYV
MAPLYAGGTFRVVKDNVLFGSVISNQFCTTSAGNQTQCNAGQKAEVVYIRIPKENRPVLLPSLRGGKPVFQVLSYERR

Nucleotide


Download         Length: 1677 bp        

>NTDB_id=89507 LDO10_RS06665 WP_223970923.1 1235727..1237403(+) (comZ) [Thermus thermophilus strain AA2-2]
GTGAACCGCAAAGGTATCGCCCTTGTAGCCACTTTGGCCCTCATGGTGGTCATCGCCCTCTTGGTCTTCGGCACCTTCTT
CACCACCCAGATAGAGCTCTGGACCACCCGCAACGACACCACCTCGGTTCAGGCCTTCTACGCCGCTGAGGCCGGCCTGC
AGAAGTACAAGGCCGCCCTCTTCCAGCAGTACGTCTGGCGGGAGCAGCAGGGCGGGACGGGCGGAGGTAGCGGCTGCTTC
ACCTCCCTAGCAAGGGGGCTAGACCTGGACCGGGATGGAACCCTCACCCCCTTCGTCAACAACCGGTTGGTCCTGGCGCA
AGACGAGGTGGTCACCGACGCCAACGGCAACCCCGTGGGGCGGTACACGGTAACCCTTTACAAGGACGCCGAAGACGGCC
AGCTCTTCACCTTGGTCTCCGAGGGCACCTCGGGCGGGGCCAAGGCCCGGGTCCAGGCCACCTTTCGCATCAGCAACTCG
GACTACCTGGAGCAGGCCATCTTCGCCGGCGCGGGCCAGGCGAACAGGTGGCTGAACGGCGGGGCCACCATCCGGGGCGG
GGTCTACGTGGTGGGAAGCCCTAACGACCCGGACCAATACGTCATAGAGGCCAACGGCAACTTTGCCCTCTACAACTGGT
ACGACCTCACCACCTACTCCGAGGTCACCAACCGGGTGGAACCCAGCTACCGGCAGGTCCAGGACCTCTGCGCAAGCCTT
AGGGTGCAGTACGGCAAGATTTCCGTGGGAGGAAGCACCCAGATCGGCGAGCCCAACAACAAGGTGAAGGGGGTCTTCGT
GGGCCGGGGCGCCCAGGACATCACCGGCGAGAACGTGGGGGTCTGCCAGAACAACAAAGGGGTCTGCACCGAGGCCATGG
GGGGCTTTGACCTCTCCGACCCGCCCCCCTTCCCCACCCTGGACGCCAAGCTGGACTCCGAGGCCTGCAAGGGCTACTCC
ACCTGGCGGGCCTGCCTCCAGGGCAAGGCCGCCTTAAGAATCCAGCGCATCGGGAACGTCCTCTCCGTGGCCAGCCCGTC
CGACGCCACCTTGCCCTCACCTTGCCTCCAAGCCATGGAGTCCGGCACCCTGACCCTGGACACCCAAAGCGTGGACTGCA
CCTTCACCCATCTGGACGGAAGCCGGGGAGGGTTCAGGTACACCTACACGGGCGACAAGAAGAGCGGGCAGGGGCTTTTG
GAAGTCTTCGGCGATGTGGTGCTGGAGGGTATAGACGTGGTGCTCAACCGGCCCGTGGACTATAGGGCCCAGTCGGGGAG
CACCAAGAGCGCCACCCTTGCGGTGCTGAAGCTTAACGGCAACGGCGGCAACCTGGACATCAACGGCAACCTCCTCCCCG
ACGCCACCTTTGGCCTCTTCCCCAACCATGCCCTGGGTTTTCTGGCCGAAGGAGACATCTACCAGCGCGGCCAGTACGTG
ATGGCCCCCCTGTACGCCGGGGGCACCTTCCGGGTGGTGAAGGACAACGTCCTCTTCGGCTCGGTCATTAGCAACCAGTT
CTGCACCACGAGCGCCGGGAACCAAACGCAATGCAACGCCGGCCAAAAGGCCGAGGTGGTCTACATCCGCATCCCCAAGG
AGAACCGCCCCGTGCTCCTGCCGAGCCTCCGCGGGGGGAAGCCCGTCTTCCAGGTGCTCTCCTATGAGCGCCGCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Thermus thermophilus HB27

92.832

100

0.928

Multiple sequence alignment