Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   R4714_RS08090 Genome accession   NZ_CP137099
Coordinates   1527528..1528259 (+) Length   243 a.a.
NCBI ID   WP_000889919.1    Uniprot ID   A0A062WNF5
Organism   Streptococcus pneumoniae strain 20824-4     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1522528..1533259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4714_RS08065 - 1524136..1524492 (+) 357 WP_000114422.1 hypothetical protein -
  R4714_RS08070 dnaJ 1524894..1526030 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  R4714_RS08075 - 1526352..1526591 (-) 240 WP_001812223.1 hypothetical protein -
  R4714_RS08080 - 1526753..1527040 (-) 288 WP_000777760.1 hypothetical protein -
  R4714_RS08085 - 1527050..1527460 (-) 411 WP_001278301.1 HIT family protein -
  R4714_RS08090 pptA 1527528..1528259 (+) 732 WP_000889919.1 ABC transporter ATP-binding protein Regulator
  R4714_RS08095 - 1528256..1529305 (+) 1050 WP_000653766.1 ABC transporter permease -
  R4714_RS08100 - 1529473..1529802 (-) 330 WP_000132572.1 hypothetical protein -
  R4714_RS08105 - 1530078..1530416 (+) 339 WP_000876670.1 LytTR family DNA-binding domain-containing protein -
  R4714_RS08110 comE/blpR 1530421..1531158 (+) 738 WP_001219123.1 response regulator transcription factor Regulator
  R4714_RS08115 - 1531172..1532512 (+) 1341 WP_219576932.1 sensor histidine kinase -
  R4714_RS08120 blpC 1532557..1532712 (-) 156 WP_000358810.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27012.49 Da        Isoelectric Point: 4.7737

>NTDB_id=895050 R4714_RS08090 WP_000889919.1 1527528..1528259(+) (pptA) [Streptococcus pneumoniae strain 20824-4]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=895050 R4714_RS08090 WP_000889919.1 1527528..1528259(+) (pptA) [Streptococcus pneumoniae strain 20824-4]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAGATGTTCCGTCTGGACCAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGCCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WNF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.614

99.177

0.72
  pptA Streptococcus thermophilus LMD-9

71.784

99.177

0.712