Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AAYR29_RS12080 Genome accession   NZ_CP154918
Coordinates   2235711..2236358 (-) Length   215 a.a.
NCBI ID   WP_064671176.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2231     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2230711..2241358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR29_RS12055 (AAYR29_12055) nsrR 2232305..2232745 (+) 441 WP_014479293.1 nitric oxide-sensing transcriptional repressor NsrR -
  AAYR29_RS12060 (AAYR29_12060) lytF 2232898..2234367 (+) 1470 WP_224912804.1 peptidoglycan endopeptidase LytF -
  AAYR29_RS12065 (AAYR29_12065) yhdC 2234409..2234732 (-) 324 WP_224912802.1 YqzG/YhdC family protein -
  AAYR29_RS12070 (AAYR29_12070) yhdB 2234933..2235175 (+) 243 WP_003233373.1 YhdB family protein -
  AAYR29_RS12075 (AAYR29_12075) yhdA 2235190..2235714 (-) 525 WP_015715573.1 FMN-dependent NADPH-azoreductase -
  AAYR29_RS12080 (AAYR29_12080) vraR 2235711..2236358 (-) 648 WP_064671176.1 two-component system response regulator YhcZ Regulator
  AAYR29_RS12085 (AAYR29_12085) yhcY 2236355..2237494 (-) 1140 WP_029726343.1 two-component system sensor histidine kinase YhcY -
  AAYR29_RS12090 (AAYR29_12090) pgcA 2237642..2239387 (-) 1746 WP_345805492.1 phosphoglucomutase -
  AAYR29_RS12095 (AAYR29_12095) glpD 2239519..2241186 (-) 1668 WP_021479678.1 glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24149.78 Da        Isoelectric Point: 6.3034

>NTDB_id=894989 AAYR29_RS12080 WP_064671176.1 2235711..2236358(-) (vraR) [Bacillus subtilis strain FUA2231]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHAGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=894989 AAYR29_RS12080 WP_064671176.1 2235711..2236358(-) (vraR) [Bacillus subtilis strain FUA2231]
ATGAAAATTGTAATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTGGTCGGAGAAGCTGCAACCGGAATAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGATACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGCTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTGA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCAAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGACCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAATCTGAATGGAGAGATCT
CGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

37.611

100

0.395