Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   AAYR29_RS08005 Genome accession   NZ_CP154918
Coordinates   1465559..1465990 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain FUA2231     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1460559..1470990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR29_RS07995 (AAYR29_07995) hexA 1462042..1464618 (-) 2577 WP_088325891.1 DNA mismatch repair protein MutS Machinery gene
  AAYR29_RS08000 (AAYR29_08000) cotE 1464751..1465296 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  AAYR29_RS08005 (AAYR29_08005) ymcA 1465559..1465990 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  AAYR29_RS08010 (AAYR29_08010) miaB 1465992..1467521 (-) 1530 WP_014479820.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  AAYR29_RS08015 (AAYR29_08015) kbl 1467669..1468847 (-) 1179 WP_014664025.1 glycine C-acetyltransferase -
  AAYR29_RS08020 (AAYR29_08020) tdh 1468860..1469903 (-) 1044 WP_014664024.1 L-threonine 3-dehydrogenase -
  AAYR29_RS08025 (AAYR29_08025) spoVS 1470169..1470429 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=894947 AAYR29_RS08005 WP_003231834.1 1465559..1465990(-) (ymcA) [Bacillus subtilis strain FUA2231]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=894947 AAYR29_RS08005 WP_003231834.1 1465559..1465990(-) (ymcA) [Bacillus subtilis strain FUA2231]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCTCGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTATTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1