Detailed information NTG0894946

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: R4535_RS01960
• Genome accession: NZ_CP137091
• Coordinates: 397991..398998 (+)
• Length: 335 a.a.
• NCBI ID: WP_000116735.1
• Uniprot ID: A0A085SEX1
• Organism: Vibrio cholerae strain DL4211
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 392991..403998

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R4535_RS01925 (R4535_01920)	ftsB	393042..393326 (+)	285	WP_001263189.1	cell division protein FtsB	-
R4535_RS01930 (R4535_01925)	ispD	393323..394021 (+)	699	WP_001061967.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
R4535_RS01935 (R4535_01930)	ispF	394018..394494 (+)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
R4535_RS01940 (R4535_01935)	truD	394524..395609 (+)	1086	WP_057555830.1	tRNA pseudouridine(13) synthase TruD	-
R4535_RS01945 (R4535_01940)	surE	395611..396363 (+)	753	WP_000698374.1	5'/3'-nucleotidase SurE	-
R4535_RS01950 (R4535_01945)	-	396356..396982 (+)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
R4535_RS01955 (R4535_01950)	nlpD	396982..397917 (+)	936	WP_076025360.1	murein hydrolase activator NlpD	-
R4535_RS01960 (R4535_01955)	rpoS	397991..398998 (+)	1008	WP_000116735.1	RNA polymerase sigma factor RpoS	Regulator
R4535_RS01965 (R4535_01960)	mutS	399092..401680 (-)	2589	WP_207807152.1	DNA mismatch repair protein MutS	-
R4535_RS01970 (R4535_01965)	cysM	401948..402835 (-)	888	WP_076025805.1	cysteine synthase CysM	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38504.37 Da
• Isoelectric Point: 4.3648

>NTDB_id=894946 R4535_RS01960 WP_000116735.1 397991..398998(+) (rpoS) [Vibrio cholerae strain DL4211]
MSVSNTVTKVEEFDFEDEALEVLETDAELASDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=894946 R4535_RS01960 WP_000116735.1 397991..398998(+) (rpoS) [Vibrio cholerae strain DL4211]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGATCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGTGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAGGTGGGGC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATTCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

3D structure

• AlphaFold DB: A0A085SEX1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.701	100	0.997