Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/comEC   Type   Machinery gene
Locus tag   LDO09_RS10595 Genome accession   NZ_AP024926
Coordinates   1947995..1950028 (+) Length   677 a.a.
NCBI ID   WP_143586889.1    Uniprot ID   -
Organism   Thermus thermophilus strain AA1-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1942995..1955028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO09_RS10560 (TthAA11_20790) - 1943772..1944236 (+) 465 WP_143586880.1 hypothetical protein -
  LDO09_RS10565 (TthAA11_20800) pfkA 1944213..1945181 (-) 969 WP_143586882.1 6-phosphofructokinase -
  LDO09_RS10570 (TthAA11_20810) rsmI 1945178..1945972 (-) 795 WP_143586885.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LDO09_RS10575 (TthAA11_20820) - 1945974..1946468 (-) 495 WP_014630403.1 hypothetical protein -
  LDO09_RS10580 (TthAA11_20830) - 1946531..1947058 (-) 528 WP_011173971.1 inorganic diphosphatase -
  LDO09_RS10585 (TthAA11_20840) - 1947091..1947717 (+) 627 WP_011173972.1 YcxB family protein -
  LDO09_RS10590 (TthAA11_20850) comEA 1947690..1947998 (+) 309 WP_024119555.1 helix-hairpin-helix domain-containing protein Machinery gene
  LDO09_RS10595 (TthAA11_20860) comA/comEC 1947995..1950028 (+) 2034 WP_143586889.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LDO09_RS10600 (TthAA11_20870) - 1950016..1950825 (-) 810 WP_143586891.1 ParB/RepB/Spo0J family partition protein -
  LDO09_RS10605 (TthAA11_20880) soj 1950809..1951558 (-) 750 WP_011173976.1 chromosome-partitioning ATPase Soj -
  LDO09_RS10610 (TthAA11_20890) rsmG 1951552..1952301 (-) 750 WP_143586893.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  LDO09_RS10615 (TthAA11_20900) mnmG 1952301..1954094 (-) 1794 WP_143586895.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -

Sequence

Protein


Download         Length: 677 a.a.        Molecular weight: 71833.97 Da        Isoelectric Point: 10.3358

>NTDB_id=89491 LDO09_RS10595 WP_143586889.1 1947995..1950028(+) (comA/comEC) [Thermus thermophilus strain AA1-1]
MRPSWTWGVGLGMGALVAAWGLFAPWAFLGLGLLPFLRLPFALGFGLVLARALLFPLPEPPWGAAVEGVFAVRGGFTRAE
GHLLWVSHYPPLPDGRYRLRGRIAPPQGRTNPGGFDQRAWLQSQGAKGVLRAESAEPLGPLPDWREGFRGRLGVGLSLEA
REVVEGLVLGDKGGLEAAYPLFQRAGLAHLLALSGLHVGVLVGFAVLGLYPLGRWRYLLALALLPFYLLLAGPSPSLVRA
SLMAGLSLLGLFLGLGGAGVVQALGLALFLQLLLRPEALLGLGFQLSYLAVLGLALVLPALRLPPGPRGYLLGGVAASLA
VQAFLLPLLLHRFGFAPLLAPLANLLALPLVALLVPLGFLKLFLGALPASLVEPLARGLLLLAGLAAQGPLLRWGEIAPV
GFALYYLGLLPLLFALHRRLPWRRALLLASLPALVGLLAARPKPLDLWMLDVGQGDALLARMGGGEVLVDGGRAEKGEAV
VRALRALGVEALELLVATHPDADHYGGLFRVIEEVPVGLALLAPGFPEDHPLAEALRARGVPAVRAGAGTRLKVGRGEVR
VLWPEALSGDDNQDGLALLLDFGRGRALLLADLPREVEARLPVGEVEALKVSHHGSQSGTSEVLLERTRPRVALIGVGPN
PFGHPHPEVLERLKRHGAEVRRTDQDGAVRVLFGYAW

Nucleotide


Download         Length: 2034 bp        

>NTDB_id=89491 LDO09_RS10595 WP_143586889.1 1947995..1950028(+) (comA/comEC) [Thermus thermophilus strain AA1-1]
ATGAGGCCTTCTTGGACCTGGGGAGTGGGGCTTGGGATGGGGGCTTTGGTGGCCGCCTGGGGGCTTTTCGCGCCTTGGGC
CTTCCTTGGGCTCGGCCTCCTTCCCTTCCTCCGCCTTCCCTTCGCCCTGGGCTTCGGCCTCGTCCTGGCCCGGGCCCTCC
TCTTCCCCTTGCCCGAGCCCCCGTGGGGCGCCGCCGTGGAGGGGGTCTTCGCCGTGAGGGGCGGGTTCACGCGGGCGGAG
GGCCACCTCCTCTGGGTGAGCCACTATCCCCCTCTACCGGACGGCCGCTACCGCCTCCGGGGGCGCATCGCCCCGCCCCA
AGGCCGGACCAACCCCGGGGGGTTTGACCAACGGGCCTGGCTCCAGAGCCAGGGGGCCAAGGGGGTGCTCCGGGCCGAAA
GCGCCGAGCCCTTGGGGCCCCTGCCCGACTGGAGGGAGGGGTTCCGGGGGCGCCTAGGGGTGGGCCTGAGCCTCGAGGCC
CGGGAGGTGGTGGAGGGCCTGGTCCTCGGGGACAAGGGGGGCTTAGAGGCGGCCTACCCCCTCTTCCAGCGGGCGGGCCT
CGCCCACCTCCTGGCGCTTTCCGGCCTTCACGTGGGGGTGCTCGTGGGCTTCGCCGTCCTCGGCCTCTACCCCCTGGGGC
GGTGGCGCTACCTCCTGGCCCTCGCCCTCCTCCCCTTCTACCTCCTCCTCGCCGGGCCGAGCCCCTCCCTGGTGCGGGCG
AGCCTCATGGCGGGCCTTTCCCTCCTCGGCCTCTTCCTGGGCCTTGGGGGGGCCGGGGTGGTCCAGGCCCTGGGGCTCGC
CCTCTTCCTCCAGCTCCTCCTCCGCCCCGAGGCCCTCCTCGGCCTCGGGTTCCAGCTCTCCTACCTCGCGGTGCTGGGCC
TGGCCCTGGTCCTCCCGGCCCTGAGGCTTCCCCCGGGCCCCAGGGGCTACCTCCTCGGGGGCGTGGCCGCAAGCCTGGCC
GTCCAGGCCTTCCTCCTCCCCCTCCTCCTCCACCGCTTCGGCTTCGCCCCCCTCCTCGCCCCCCTCGCCAACCTCCTCGC
CCTCCCCCTGGTGGCCCTCCTCGTGCCCCTCGGCTTCCTCAAGCTCTTCCTCGGCGCCCTCCCCGCCTCCCTGGTGGAGC
CCCTCGCCCGGGGGCTCCTCCTCCTGGCAGGGCTTGCGGCCCAAGGGCCCCTCCTCCGCTGGGGGGAGATCGCCCCCGTG
GGCTTTGCCCTCTACTACCTGGGCCTTCTCCCCCTCCTTTTCGCCCTCCACCGCAGGCTTCCCTGGCGGCGCGCCCTCCT
CCTCGCCTCCCTGCCCGCCCTGGTGGGCCTCCTCGCCGCCCGGCCCAAGCCCCTGGACCTCTGGATGCTGGACGTGGGCC
AGGGGGACGCCCTCCTCGCCCGCATGGGGGGCGGGGAGGTCCTGGTGGACGGGGGACGGGCGGAGAAGGGGGAGGCGGTG
GTCCGGGCCCTCCGCGCCCTCGGGGTGGAGGCCCTGGAGCTTTTGGTGGCCACCCACCCCGACGCGGACCACTACGGGGG
GCTTTTCCGGGTGATAGAGGAGGTTCCCGTGGGCCTTGCCCTCCTCGCCCCTGGTTTCCCCGAGGACCACCCCCTGGCCG
AAGCCCTAAGGGCGCGGGGCGTCCCCGCGGTGCGGGCCGGGGCGGGAACCCGCCTTAAGGTGGGCCGGGGCGAGGTCCGG
GTGCTCTGGCCCGAGGCCCTCTCCGGGGACGACAACCAAGACGGCCTCGCCCTCCTCCTGGACTTCGGCCGGGGACGGGC
CCTCCTCCTCGCCGACCTGCCCCGGGAGGTGGAGGCCAGGCTTCCCGTGGGGGAGGTGGAGGCGCTCAAGGTGAGCCACC
ATGGCTCCCAAAGCGGCACCTCCGAGGTCCTCCTGGAAAGGACGAGGCCCCGGGTGGCCCTCATCGGGGTGGGGCCCAAC
CCCTTCGGCCACCCCCACCCCGAGGTCCTGGAGCGCCTTAAGCGCCACGGCGCGGAGGTGCGCCGCACCGACCAGGACGG
GGCGGTGCGCGTCCTCTTCGGCTACGCCTGGTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(451-634)

Competence protein (Competence)

(167-418)

Domain of unknown function (DUF4131) (DUF4131)

(93-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Thermus thermophilus HB27

97.932

100

0.979
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.359

90.399

0.365

Multiple sequence alignment