Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | LDO09_RS10590 | Genome accession | NZ_AP024926 |
| Coordinates | 1947690..1947998 (+) | Length | 102 a.a. |
| NCBI ID | WP_024119555.1 | Uniprot ID | - |
| Organism | Thermus thermophilus strain AA1-1 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1942690..1952998
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDO09_RS10560 (TthAA11_20790) | - | 1943772..1944236 (+) | 465 | WP_143586880.1 | hypothetical protein | - |
| LDO09_RS10565 (TthAA11_20800) | pfkA | 1944213..1945181 (-) | 969 | WP_143586882.1 | 6-phosphofructokinase | - |
| LDO09_RS10570 (TthAA11_20810) | rsmI | 1945178..1945972 (-) | 795 | WP_143586885.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| LDO09_RS10575 (TthAA11_20820) | - | 1945974..1946468 (-) | 495 | WP_014630403.1 | hypothetical protein | - |
| LDO09_RS10580 (TthAA11_20830) | - | 1946531..1947058 (-) | 528 | WP_011173971.1 | inorganic diphosphatase | - |
| LDO09_RS10585 (TthAA11_20840) | - | 1947091..1947717 (+) | 627 | WP_011173972.1 | YcxB family protein | - |
| LDO09_RS10590 (TthAA11_20850) | comEA | 1947690..1947998 (+) | 309 | WP_024119555.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| LDO09_RS10595 (TthAA11_20860) | comA/comEC | 1947995..1950028 (+) | 2034 | WP_143586889.1 | DNA internalization-related competence protein ComEC/Rec2 | Machinery gene |
| LDO09_RS10600 (TthAA11_20870) | - | 1950016..1950825 (-) | 810 | WP_143586891.1 | ParB/RepB/Spo0J family partition protein | - |
| LDO09_RS10605 (TthAA11_20880) | soj | 1950809..1951558 (-) | 750 | WP_011173976.1 | chromosome-partitioning ATPase Soj | - |
| LDO09_RS10610 (TthAA11_20890) | rsmG | 1951552..1952301 (-) | 750 | WP_143586893.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
Sequence
Protein
Download Length: 102 a.a. Molecular weight: 10947.23 Da Isoelectric Point: 10.3435
>NTDB_id=89490 LDO09_RS10590 WP_024119555.1 1947690..1947998(+) (comEA) [Thermus thermophilus strain AA1-1]
MVLGYLLAVALLGLLALWPKLAPAPLPVRVEALGKVAPLPQAQTPVSLNEASLEELMALPGIGPVLARRIVEGRPYARVE
DLLKVKGIGPATLERLRPYLRP
MVLGYLLAVALLGLLALWPKLAPAPLPVRVEALGKVAPLPQAQTPVSLNEASLEELMALPGIGPVLARRIVEGRPYARVE
DLLKVKGIGPATLERLRPYLRP
Nucleotide
Download Length: 309 bp
>NTDB_id=89490 LDO09_RS10590 WP_024119555.1 1947690..1947998(+) (comEA) [Thermus thermophilus strain AA1-1]
CTGGTCCTCGGCTACCTCCTCGCGGTAGCCCTCCTCGGCCTCCTCGCCCTCTGGCCCAAGCTCGCCCCCGCCCCGCTTCC
GGTGCGGGTGGAGGCCCTGGGAAAGGTCGCCCCTTTGCCCCAGGCGCAAACCCCCGTGAGCCTGAACGAGGCGAGCCTGG
AAGAGCTCATGGCCCTGCCCGGCATCGGCCCCGTCCTAGCCCGGCGCATCGTGGAGGGCAGGCCCTACGCCCGGGTGGAG
GACCTTCTCAAGGTGAAAGGGATCGGCCCCGCCACCCTGGAGCGCCTCCGCCCCTACCTCCGGCCATGA
CTGGTCCTCGGCTACCTCCTCGCGGTAGCCCTCCTCGGCCTCCTCGCCCTCTGGCCCAAGCTCGCCCCCGCCCCGCTTCC
GGTGCGGGTGGAGGCCCTGGGAAAGGTCGCCCCTTTGCCCCAGGCGCAAACCCCCGTGAGCCTGAACGAGGCGAGCCTGG
AAGAGCTCATGGCCCTGCCCGGCATCGGCCCCGTCCTAGCCCGGCGCATCGTGGAGGGCAGGCCCTACGCCCGGGTGGAG
GACCTTCTCAAGGTGAAAGGGATCGGCCCCGCCACCCTGGAGCGCCTCCGCCCCTACCTCCGGCCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Thermus thermophilus HB27 |
100 |
100 |
1 |
| comEA | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
39.815 |
100 |
0.422 |